View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1857_low_5 (Length: 364)
Name: NF1857_low_5
Description: NF1857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1857_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 24 - 348
Target Start/End: Original strand, 46913384 - 46913708
Alignment:
| Q |
24 |
ctatttctacgacaccacggagcttccaccacctgacttttcttccgtcttcgcctcccaacggttcttcttctcctccccaggcagctccaattccatc |
123 |
Q |
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| T |
46913384 |
ctatttctacgacaccacggagcttccaccacctgacttttcttccgtcttcgcctcccaacggttcttcttctcctccccaggcagctccaattccatc |
46913483 |
T |
|
| Q |
124 |
acagagtctccctccaacgacactctaccctgtaataactcgttgataccaagaggaggtagtgtgaagagggtgccaaaatattctgtaaacccttacg |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46913484 |
acagagtctccctccaacgacactctaccctgtaataactcgttgataccaagaggaggtagtgtgaagagggtgccaaaatattctgtaaacccttacg |
46913583 |
T |
|
| Q |
224 |
ttgatttcctccgttctatgcaggaaatgattcaatctcaacaacaagtggttgatgttactaatgattgggattatcttcatgaacttctcttatgcta |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
46913584 |
ttgatttcctccgttctatgcaggaaatgattcaatctcaacaacaagtggtggatgttactaacgattgggattatcttcatgaacttctcttatgcta |
46913683 |
T |
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| Q |
324 |
tcttgctcttaatcctacacatact |
348 |
Q |
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||||||||||||||||||||||||| |
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| T |
46913684 |
tcttgctcttaatcctacacatact |
46913708 |
T |
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