View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1857_low_8 (Length: 318)
Name: NF1857_low_8
Description: NF1857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1857_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 34934001 - 34934234
Alignment:
| Q |
1 |
tttgcttgaaaggacatgtgagttttttactttacacagaccatttcaatggtaatatgtgttgaatgttctctaattattatgaaaatgactcatgata |
100 |
Q |
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| T |
34934001 |
tttgcttgaaaggacatgtgagttttttactttacacagaccatttcaatggtaatatgtgttgaatgttctctaattattatgaaaatgactcatgata |
34934100 |
T |
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| Q |
101 |
acacaacagtatacaaaagaatatctccctttttctttaccaaatgtatctttcaatggagccaattcatagagcatcaaaatgtaggtatatatttctt |
200 |
Q |
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| T |
34934101 |
acacaacagtatacaaaagaatatctccctttttctttaccaaatgtatctttcaatggagccaattcatagagcatcaaaatgtaggtatatatttctt |
34934200 |
T |
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| Q |
201 |
ataacaacgacaatttaaatagtagttagtcatg |
234 |
Q |
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| T |
34934201 |
ataacaacgacaatttaaatagtaattagtcatg |
34934234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 191
Target Start/End: Original strand, 34930326 - 34930409
Alignment:
| Q |
108 |
agtatacaaaagaatatctccctttttc-tttaccaaatgtatctttcaatggagccaattcatagagcatcaaaatgtaggtat |
191 |
Q |
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| T |
34930326 |
agtatacaaaagaatatctcacttttttatttaccacatatatctttcaacg-agccaattcttagagcatctaaatgtaggtat |
34930409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 281
Target Start/End: Original strand, 34934414 - 34934445
Alignment:
| Q |
250 |
tggtagttagtcatgttgtgtgtaactatctc |
281 |
Q |
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| T |
34934414 |
tggtagttagtcatgttgtgtgtaactatctc |
34934445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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