View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1857_low_9 (Length: 254)
Name: NF1857_low_9
Description: NF1857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1857_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 26213509 - 26213287
Alignment:
| Q |
15 |
tatgcagaccaataaataagtaaaagcctaaaataatgaattgaaaaagtttgatgcatacatagaattgcaaaaccaaatcagcaacaaagtttgtata |
114 |
Q |
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| T |
26213509 |
tatgcagaccaataaataagtaaaagcctaaaataatgaattgaaaaagtttgatgcatacatagaattgcaaaaccaaatcagcaacaaagtttgtata |
26213410 |
T |
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| Q |
115 |
taggcannnnnnnnaaaaataaaataaaattagagtcaattattacatatttgtccattgaagtctaacctcataattttatgatgcagtactaccaccc |
214 |
Q |
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| T |
26213409 |
caggcatttttttttaaa--aaaaaaaaattagagtcaattattacatatttgtgcattgaagtctaacctcataattttatgatgcagtaataccaccc |
26213312 |
T |
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| Q |
215 |
taaagtacaaagatgaagataaaaa |
239 |
Q |
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||||||||||||||||||||||||| |
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| T |
26213311 |
taaagtacaaagatgaagataaaaa |
26213287 |
T |
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