View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1858-Insertion-1 (Length: 897)
Name: NF1858-Insertion-1
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858-Insertion-1 |
 | |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 839; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 839; E-Value: 0
Query Start/End: Original strand, 7 - 897
Target Start/End: Complemental strand, 31995008 - 31994118
Alignment:
| Q |
7 |
acttaacaatggttttctcggacgtgcaatcctcaaagcgtatggagtagccaacctcgtgtcctagcttaacacccatttcttgagaaactcgggcagc |
106 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31995008 |
acttaacaatggttttctcggatgtgcaatcctcaaagcgtatggagtagccaacctcgtgtcctagcttaacacccatttcttgagaaactcgggcagc |
31994909 |
T |
|
| Q |
107 |
aacactcatagcagcaacacgtcgtggctgagtacatgcaatcattcttccatcgttcgtataaccagcttcgtgaagatattggggaatctgtgcagtt |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31994908 |
aacactcatagcagcaacacgtcgtggctgagtacatgcaatcattcttccatccttcgtataaccagcttcgtgaagatattggggaatctgtgtagtt |
31994809 |
T |
|
| Q |
207 |
tttccagaaccagtttcaccaacaatgacaagtacttggtgatcatgaacagcctggagaaattcatccttaaaaggatatataggtagctttttcctct |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31994808 |
tttccagaaccagtttcaccaacaatgacaagtacttggtgatcatgaacagcctggagaaattcatccttaaaaggatatataggtagctttttcctct |
31994709 |
T |
|
| Q |
307 |
cctccttaagtgcctcataagccgatctctttgctcgagatttttcagatgcaatctcttcttgacgatcaaacttatctccacccatcactgactcctt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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|
| T |
31994708 |
cctccttaagtgcctcataagccgatctctttgctcgagatttttcagatgcaatctcttcttgacaatcaaacttatctccacccatcactgattcctt |
31994609 |
T |
|
| Q |
407 |
gataacatcaatctggtcctcaaacacaaactgataatcatcagagacatttgttttatttttcgaaccaaatttcatggttgcctttctaatttgatgt |
506 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31994608 |
gataacatcaatctgatcctcaaacacaaactgataatcatcagagacatttgttttatttttcgaaccaaatttcatcgttgcctttctaatttgatgt |
31994509 |
T |
|
| Q |
507 |
tcctcccaagcctcttctttgtcagcagtactgtaacgctgcgtagcaaccgaaaaccgcttttcctgattaacgccgccactttgttgatgatcatcat |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31994508 |
tcctcccaagcctcttctttgtcagcagtactgtaacgctgtgtagcaaccgaaaaccgcttttcctgattaacgccgccactttgttgatgatcatcat |
31994409 |
T |
|
| Q |
607 |
aagcttctggcattatatactccttataatcctcagcgctctctaagcctctcttcttcgaaactacatcgtatatatctttcttgtgcttgagatcaca |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31994408 |
aagcttctggcattatatactccttataatcctcagcgctctctaagcctctcttcttcgaaactacatcgtatatatctttcttgtgcttgagatcaca |
31994309 |
T |
|
| Q |
707 |
gtattcagcttttgaaaccctaactccttcaaatagatattgttcatctagaatatactccttaagctgttgcaatttcttttcctcccttcttttcaag |
806 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
31994308 |
gtattcagcttttgaaaccctaactccttcaaatagatattgttcatctataatatactccttaaggtgttgcagtttcttttcctcccttcttttcaag |
31994209 |
T |
|
| Q |
807 |
tagtcataccttgaaaaatttctcaagttttgaatatcttcttcagctttagatctcttgaattccctctcaacttgaactgctcctttac |
897 |
Q |
| |
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|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31994208 |
tactcataccttgaaaaatttctcaaggtttgaatatcttcttcagctttagatctcttgaattccctctcaacttgaactgctcctttac |
31994118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 304; Significance: 1e-170; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-170
Query Start/End: Original strand, 9 - 628
Target Start/End: Complemental strand, 24009458 - 24008839
Alignment:
| Q |
9 |
ttaacaatggttttctcggacgtgcaatcctcaaagcgtatggagtagccaacctcgtgtcctagcttaacacccatttcttgagaaactcgggcagcaa |
108 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
24009458 |
ttaacaatggtcttcttggacgtgcaatcctcaaagcgtatggagtaaccaacctcgtgtcctagtttaacacccatttcttgagaaactcgggcagcaa |
24009359 |
T |
|
| Q |
109 |
cactcatagcagcaacacgtcgtggctgagtacatgcaatcattcttccatcgttcgtataaccagcttcgtgaagatattggggaatctgtgcagtttt |
208 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24009358 |
cactcatagcagcaacacgccgtggctgagtacatgcaatcatttttccatgcttcgtataaccagcttcgtgaagatattggggaatctgtgtagtttt |
24009259 |
T |
|
| Q |
209 |
tccagaaccagtttcaccaacaatgacaagtacttggtgatcatgaacagcctggagaaattcatccttaaaaggatatataggtagctttttcctctcc |
308 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||| |||| || || ||| | |||||| |||||||||||| |
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|
| T |
24009258 |
tccggaaccagtttcgccaacaatgacaagtacctggtgatcatgaacagcttggagaaatttatcccgaacagcatagacaggtagttttttcctctcc |
24009159 |
T |
|
| Q |
309 |
tccttaagtgcctcataagccgatctctttgctcgagatttttcagatgcaatctcttcttgacgatcaaacttatctccacccatcactgactccttga |
408 |
Q |
| |
|
||| || ||| || |||| || ||||| |||| ||||||||| |||||| ||||| | | |||||||||| | ||| |||| || ||| |||||| |
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| T |
24009158 |
tcccgaattgcgtctaaagctgacctcttagctctagatttttctaatgcaacctctttctcataatcaaacttaacaccatccattaccgacgccttga |
24009059 |
T |
|
| Q |
409 |
taacatcaatctggtcctcaaacacaaactgataatcatcagagacatttgttttatttttcgaaccaaatttcatggttgcctttctaatttgatgttc |
508 |
Q |
| |
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| | ||||||||||||||||||||||||||| ||||||||| |||| | | |||||| ||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
24009058 |
ttaaatcaatctggtcctcaaacacaaactggtaatcatcacagacttgtcttttatctttcgaaccaaatttcagtgttgcctttctaatttgatgttc |
24008959 |
T |
|
| Q |
509 |
ctcccaagcctcttctttgtcagcagt------actgtaacgctgcgtagcaaccgaaaaccgcttttcctgattaacgccgccactttgttgatgatca |
602 |
Q |
| |
|
|||||||||||||||||| |||||| | | ||||||||||| |||| || ||||||| |||||| |||||||| || | ||| |||||| |
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| T |
24008958 |
ctcccaagcctcttctttctcagcatttggatcattgtaacgctgcctagccacagaaaacctcttttcttgattaacaccagc------ttgctgatca |
24008865 |
T |
|
| Q |
603 |
tcataagcttctggcattatatactc |
628 |
Q |
| |
|
|||||||||||||| ||| ||||||| |
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|
| T |
24008864 |
tcataagcttctggtattctatactc |
24008839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 659 - 755
Target Start/End: Complemental strand, 24008817 - 24008721
Alignment:
| Q |
659 |
cttcttcgaaactacatcgtatatatctttcttgtgcttgagatcacagtattcagcttttgaaaccctaactccttcaaatagatattgttcatct |
755 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||||| ||| ||||| |||||| | | |||| | | ||||||||||||||||| || |||||| |
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| T |
24008817 |
cttcttcgcaagtacattgtatatatctttcttgtgcatgaaatcacggtattccacgtctgaacgcttcactccttcaaatagataatgctcatct |
24008721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 27 - 528
Target Start/End: Complemental strand, 15841448 - 15840947
Alignment:
| Q |
27 |
gacgtgcaatcctcaaagcgtatggagtagccaacctcgtgtcctagcttaacacccatttcttgagaaactcgggcagcaacactcatagcagcaacac |
126 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15841448 |
gacgtgcaatcctcaaatcgtatggagtaaccaacctcatgtcctagtttaacacccatttcttcagaaactcgggcagcaacactcatagcagcaacac |
15841349 |
T |
|
| Q |
127 |
gtcgtggctgagtacatgcaatcattcttccatcgttcgtataaccagcttcgtgaagatattggggaatctgtgcagtttttccagaaccagtttcacc |
226 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| || | || |||||||| ||||||||||| |||||||||| |||||| ||||||||||||||||| |
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|
| T |
15841348 |
gtcgtggctgagtacatgcaagcattcttccatgctttatgtatccagcttcatgaagatattgaggaatctgtgtagttttcccagaaccagtttcacc |
15841249 |
T |
|
| Q |
227 |
aacaatgacaagtacttggtgatcatgaacagcctggagaaattcatccttaaaaggatatataggtagctttttcctctcctccttaagtgcctcataa |
326 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
15841248 |
aacaatcacaagtacttggtgatcatgaacagcttggagaaattcatcccgaaaaggatagataggtagctttttcctctcctcctgaagtgcctcgaaa |
15841149 |
T |
|
| Q |
327 |
gccgatctctttgctcgagatttttcagatgcaatctcttcttgacgatcaaacttatctccacccatcactgactccttgataacatcaatctggtcct |
426 |
Q |
| |
|
| ||||||||||| | |||||||| |||||||||||| | | ||||||||||| |||| |||| ||||| |||||||| ||||||||| |||| |
|
|
| T |
15841148 |
actgatctctttgcgctagattttttcaatgcaatctcttgtccataatcaaacttatgtccatccattactgatgccttgatacaatcaatctgctcct |
15841049 |
T |
|
| Q |
427 |
caaacacaaactgataatcatcagagacatttgttttatttttcgaaccaaatttcatggttgcctttctaatttgatgttcctcccaagcctcttcttt |
526 |
Q |
| |
|
||||||||||| |||||||||||||||| | | ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
15841048 |
caaacacaaaccgataatcatcagagacttgtcgcttatttttcgaaccatatttcagctttgcctttctaatttgatgttcctcccaagcctcttcttt |
15840949 |
T |
|
| Q |
527 |
gt |
528 |
Q |
| |
|
|| |
|
|
| T |
15840948 |
gt |
15840947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 552 - 741
Target Start/End: Complemental strand, 15840915 - 15840738
Alignment:
| Q |
552 |
gcaaccgaaaaccgcttttcctgattaacgccgccactttgttgatgatcatcataagcttctggcattatatactccttataatcctcagcgctctcta |
651 |
Q |
| |
|
||||| ||||| | |||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||| | |||| | || | ||||| |
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|
| T |
15840915 |
gcaacagaaaatctcttttcttgattaacgcc---actttgttgat---catcataagcttctggcattctatacgcattat------ccgcaccctcta |
15840828 |
T |
|
| Q |
652 |
agcctctcttcttcgaaactacatcgtatatatctttcttgtgcttgagatcacagtattcagcttttgaaaccctaactccttcaaata |
741 |
Q |
| |
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| ||| | |||||| || ||| |||||||| |||||||||||| ||||||||| | |||| ||||||||| | |||||||||||||| |
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| T |
15840827 |
accctattttcttcacaagtacctcgtatatctctttcttgtgcatgagatcacggcattcttcttttgaaagctcaactccttcaaata |
15840738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 4e-25; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 54 - 149
Target Start/End: Complemental strand, 7286553 - 7286458
Alignment:
| Q |
54 |
tagccaacctcgtgtcctagcttaacacccatttcttgagaaactcgggcagcaacactcatagcagcaacacgtcgtggctgagtacatgcaatc |
149 |
Q |
| |
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||||| |||||||||||||| |||||||| | ||| |||| |||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
7286553 |
tagcctacctcgtgtcctagtttaacacctaattcgtgagcaactcgagcagccacactcatagcagcaacacgacgtggctgagtacatgcaatc |
7286458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 7286064 - 7285994
Alignment:
| Q |
171 |
ccagcttcgtgaagatattggggaatctgtgcagtttttccagaaccagtttcaccaacaatgacaagtac |
241 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||| ||| ||||||||||| |||||||||||||| |||||||| |
|
|
| T |
7286064 |
ccagcttcatgaagatattgaggaatttgtgtagtctttccagaaccggtttcaccaacaattacaagtac |
7285994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 243 - 312
Target Start/End: Complemental strand, 7285795 - 7285726
Alignment:
| Q |
243 |
tggtgatcatgaacagcctggagaaattcatccttaaaaggatatataggtagctttttcctctcctcct |
312 |
Q |
| |
|
||||| ||||||||||| ||||| ||||||||| | ||| ||| || |||| ||||||||||||||||| |
|
|
| T |
7285795 |
tggtggtcatgaacagcttggagcaattcatcccgataagtataaatgggtaactttttcctctcctcct |
7285726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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