View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858-Insertion-10 (Length: 569)
Name: NF1858-Insertion-10
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858-Insertion-10 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 527; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 7 - 569
Target Start/End: Original strand, 3084308 - 3084870
Alignment:
| Q |
7 |
acaaggaatgtcagataatccaatgaacgctgtttatgtcccgtctccttcccccgtagaggtctccctcatttcagttgttggcattaccaacttcggc |
106 |
Q |
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| T |
3084308 |
acaaggaatgtcagataatccaatgaacgctgtttatgtcccgtctccttcccccgtagaggtctccctcatttcagttgttggcattaccaacttcggc |
3084407 |
T |
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| Q |
107 |
agctacattgaagccgtgagcggtgcagccttcaccagtaatggaagcgagttcaaaatgtttactcccaaggtacatttaacaatttgtgttcgatcta |
206 |
Q |
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| T |
3084408 |
agctacattgaagccgtgagcggtgcagccttcaccagtaatggaagcgagttcacaatgtttactcccaaggtacatttaacaatttgtgttccatcta |
3084507 |
T |
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| Q |
207 |
aatcaattcttacaaactagtgcgatatgttttcgacttatgaatactttttcaagacatggtacattttcttctaggaagacatactacatttactgca |
306 |
Q |
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| T |
3084508 |
aatcaattcttacaaactagtgcgatatgtcttcgacttattaatactttttcaagacatggtacattttcttttaggaagacatactacatttactgca |
3084607 |
T |
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| Q |
307 |
aagctttcaaaacaacatgcaattacacttgctaagtcacacccaactcaatttattatgtaaaagttaaaacccaaaccaaataaacatcaatatggcc |
406 |
Q |
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| T |
3084608 |
aagctttcaaaacaacatgcaattgcacttgctaagttacacccaactcaatttattatgtaaaagttaaaatccaaaccaaataaacatcaatatggcc |
3084707 |
T |
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| Q |
407 |
tagctaacaaataacaatattacactatttttgggaccgactcccctgcaattaagaaatcaacgtattcatacagccggacattggtagccgtttgatc |
506 |
Q |
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| T |
3084708 |
tagctaacaaataacaatattacactatttttgggaccgactctcctgcaattaagaaatcaacgtattcatacagccggacattggtagccgtttgatc |
3084807 |
T |
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| Q |
507 |
aaaattgaacggtccatattcaagcacgatattttgatttataaaatagaaataaaatttgta |
569 |
Q |
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| T |
3084808 |
aaaattgaacggtccatattcaagcacgatattttgatttataaaatagaaataaaatttgta |
3084870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 7 - 273
Target Start/End: Original strand, 3093188 - 3093455
Alignment:
| Q |
7 |
acaaggaatgtcagataatccaatgaacgctgtttatgtcccgtctccttcccccgtagaggtctccctcatttcagttgttggcattaccaacttcggc |
106 |
Q |
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| T |
3093188 |
acaaggaatgtcagataacccaatgaactctgtttatgtcccatctccttctccggtagaggtttccctcatttctgttgttggcattaccagctttggc |
3093287 |
T |
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| Q |
107 |
agctacattgaagccgtgagcggtgcagccttcaccagtaatggaagcgagttcaaaatgtttactcccaaggtacatttaacaatttgtgttcgatcta |
206 |
Q |
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| T |
3093288 |
agctatattgaagccgctagcggcgcaacattcaccggttctcaaagagacttcggaatgttttctcccgaggtacattttaaaatttgtgttcgatcta |
3093387 |
T |
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| Q |
207 |
aatcaattcttacaaactagtgcgatatgttttcgacttatga-atactttttcaagacatggtacat |
273 |
Q |
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| T |
3093388 |
aatcaattcttacaaactagtgcgatatgtctttgacctatgacttactttttaaagacatgttacat |
3093455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 443 - 541
Target Start/End: Original strand, 3093623 - 3093718
Alignment:
| Q |
443 |
ccgactcccctgcaattaagaaatcaacgtattcatacagccggacattggtagccgtttgatcaaaattgaacggtccatattcaagcacgatatttt |
541 |
Q |
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| T |
3093623 |
ccgactcccctgcaattaaggaatccatgcattcatgcagtcggac---ggtagtcgtttgatcaaaattgaacaagtcatattcaatcgcgatatttt |
3093718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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