View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1858-Insertion-11 (Length: 545)

Name: NF1858-Insertion-11
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1858-Insertion-11
NF1858-Insertion-11
[»] chr5 (1 HSPs)
chr5 (8-533)||(2243789-2244314)
[»] chr7 (1 HSPs)
chr7 (415-526)||(28779460-28779571)
[»] chr2 (7 HSPs)
chr2 (411-526)||(34140835-34140952)
chr2 (143-284)||(34166630-34166771)
chr2 (322-379)||(34140735-34140792)
chr2 (481-533)||(27145881-27145933)
chr2 (480-532)||(33392480-33392532)
chr2 (411-487)||(34167384-34167459)
chr2 (144-278)||(34140542-34140675)
[»] chr1 (4 HSPs)
chr1 (145-287)||(41042713-41042855)
chr1 (171-320)||(41036911-41037060)
chr1 (482-525)||(50443581-50443624)
chr1 (485-522)||(5520459-5520496)
[»] chr8 (2 HSPs)
chr8 (482-525)||(15660389-15660432)
chr8 (485-522)||(4946419-4946456)
[»] chr6 (1 HSPs)
chr6 (482-525)||(22275053-22275096)
[»] chr3 (1 HSPs)
chr3 (482-525)||(1915969-1916012)
[»] chr4 (2 HSPs)
chr4 (483-513)||(3088524-3088554)
chr4 (467-517)||(51227974-51228024)


Alignment Details
Target: chr5 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 8 - 533
Target Start/End: Original strand, 2243789 - 2244314
Alignment:
Q  8 attttcacccagccataccaaaacaaaccataaccaaatggcgaccctaactcgtccctcatctggcgaagtcatttgccgtcgttggcttcaactctgt 107  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  2243789 attttcacccagccttaccaaaacaaaccataaccaaatggtgaccctaactcgaccctcatctggcgaagtcgtttgccgtcgttggcttcaactctgt 2243888  T
Q  108 ttttcatataacccttttccaatggcttcaacgtagctggaaataagactgatttaatatgccaatacattgtttcacttgatacagaatcaagaagggt 207  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2243889 ttttcacataacccttttccaatggcttcaacgtagctgaaaataagactgatttaatatgccaatacattgtttcacttgatacagaatcaagaagggt 2243988  T
Q  208 gacatgtaaattatgcaagcttccatttacaagaagtgcttacgtagtgaagcatgatttggatggaactaatagagatgtccagccatgtcgagtggtg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||     
T  2243989 gacatgtaaattatgcaagcttccatttacaagaagtgcttacgtagtgaagcatgatttggatggaactagtagagatgtccagccatgtcgagtggtt 2244088  T
Q  308 actccatatgtcaataaacttggctggaactaatagagagggagctagtagctatgagaaacttattttgaacttggtaagnnnnnnnaaagcttctgaa 407  Q
     ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         | | ||||||||    
T  2244089 cctccagatgtcaataaacttggctggaactaatagagagggagctagtagctatgagaaacttattttgaacttggtagttttttttagaacttctgaa 2244188  T
Q  408 tatttatgaacttagtcttttggattttgggtcactttatgaacacattagttgattgctatgtatttgaaaaatgatgattatgacttattaatttagt 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||| ||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  2244189 tatttatgaacttagtcttttggattttgggtcactttatgaactaattacttggttgctatgtatttgaagaatgatgattatgacttattaatttagt 2244288  T
Q  508 ttaatgtatttatgatttagaagtta 533  Q
    ||||||||||||||||||||||||||    
T  2244289 ttaatgtatttatgatttagaagtta 2244314  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 415 - 526
Target Start/End: Original strand, 28779460 - 28779571
Alignment:
Q  415 gaacttagtcttttggattttgggtcactttatgaacacattagttgattgctatgtatttgaaaaatgatgattatgacttattaatttagtttaatgt 514  Q
    |||||||||||||| ||||||| || ||||||  ||| ||||| ||  ||| |||| ||||||| || |||||||||||| ||||||||||||||||||     
T  28779460 gaacttagtcttttcgattttgagttactttaccaactcattactttgttgttatgaatttgaagaaggatgattatgacgtattaatttagtttaatgc 28779559  T
Q  515 atttatgattta 526  Q
    | ||||||||||    
T  28779560 acttatgattta 28779571  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 411 - 526
Target Start/End: Original strand, 34140835 - 34140952
Alignment:
Q  411 ttatgaacttagtcttttggattttgggtca--ctttatgaacacattagttgattgctatgtatttgaaaaatgatgattatgacttattaatttagtt 508  Q
    |||||||||||||||||||||| ||| || |  ||||||| || ||||| ||| ||| |||| |  |||  ||  |||||||||||||||||||||||||    
T  34140835 ttatgaacttagtcttttggatgttgagttatactttatggactcattacttggttgttatgaacctgaggaactatgattatgacttattaatttagtt 34140934  T
Q  509 taatgtatttatgattta 526  Q
    ||||||| ||||||||||    
T  34140935 taatgtacttatgattta 34140952  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 143 - 284
Target Start/End: Original strand, 34166630 - 34166771
Alignment:
Q  143 gctggaaataagactgatttaatatgccaatacattgtttcacttgatacagaatcaagaagggtgacatgtaaattatgcaagcttccatttacaagaa 242  Q
    |||||||||||||| | || |  ||| |||| || |||||| |||||| |||||| || ||||||||   || |||| ||  ||||||||||||||||||    
T  34166630 gctggaaataagaccggttcatcatggcaatgcactgtttcgcttgatgcagaataaaaaagggtgaatagttaattttgtgagcttccatttacaagaa 34166729  T
Q  243 gtgcttacgtagtgaagcatgatttggatggaactaatagag 284  Q
    ||||||||  |||||||||| |||||  |||||||| |||||    
T  34166730 gtgcttacaaagtgaagcatcatttgactggaactagtagag 34166771  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 322 - 379
Target Start/End: Original strand, 34140735 - 34140792
Alignment:
Q  322 taaacttggctggaactaatagagagggagctagtagctatgagaaacttattttgaa 379  Q
    |||| |||||||||||||||||||||||| |||||||  |||| ||||||||||||||    
T  34140735 taaatttggctggaactaatagagagggaactagtagagatgaaaaacttattttgaa 34140792  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 533
Target Start/End: Complemental strand, 27145933 - 27145881
Alignment:
Q  481 atgatgattatgacttattaatttagtttaatgtatttatgatttagaagtta 533  Q
    ||||||||||||||||||||||||||||||| |||||||  ||||| ||||||    
T  27145933 atgatgattatgacttattaatttagtttaaagtatttaaaatttacaagtta 27145881  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 480 - 532
Target Start/End: Original strand, 33392480 - 33392532
Alignment:
Q  480 aatgatgattatgacttattaatttagtttaatgtatttatgatttagaagtt 532  Q
    |||||||||||||||||||||| ||||||||||| | |||||||||| |||||    
T  33392480 aatgatgattatgacttattaacttagtttaatgcacttatgatttataagtt 33392532  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 487
Target Start/End: Original strand, 34167384 - 34167459
Alignment:
Q  411 ttatgaacttagtcttttggattttgggtcactttatgaacacattagttgattgctatgtatttgaaaaatgatga 487  Q
    ||||||||||||||||||||||||| ||| ||||||||||| ||||| ||| | | |||| | |||| |||||||||    
T  34167384 ttatgaacttagtcttttggattttaggt-actttatgaactcattacttggtagttatgaacttgagaaatgatga 34167459  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 144 - 278
Target Start/End: Original strand, 34140542 - 34140675
Alignment:
Q  144 ctggaaataagactgatttaatatgccaatacattgtttcacttgatacagaatcaagaagggtgacatgtaaattatgcaagcttccatttacaagaag 243  Q
    ||||||||||||| |||| || ||| ||||||| | ||||  || || |||||| || ||||||||  |||||||| ||  |||||||||||||  ||||    
T  34140542 ctggaaataagaccgattcaacatggcaatacactatttccatt-atgcagaatgaaaaagggtgaagtgtaaattttgtgagcttccatttactggaag 34140640  T
Q  244 tgcttacgtagtgaagcatgatttggatggaacta 278  Q
    ||| |||  |||||||||| |||||  ||||||||    
T  34140641 tgcatacaaagtgaagcatcatttgcctggaacta 34140675  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 145 - 287
Target Start/End: Original strand, 41042713 - 41042855
Alignment:
Q  145 tggaaataagactgatttaatatgccaatacattgtttcacttgatacagaatcaagaagggtgacatgtaaattatgcaagcttccatttacaagaagt 244  Q
    ||||||||||| ||||  |  ||| |||||||||||||| |||||| ||  ||||||||||||||  |||||||| ||  ||||| ||||| || |||||    
T  41042713 tggaaataagagtgatccagcatgacaatacattgtttctcttgatgcaagatcaagaagggtgaagtgtaaattttgtgagctttcatttgcatgaagt 41042812  T
Q  245 gcttacgtagtgaagcatgatttggatggaactaatagagatg 287  Q
    ||||||  |||||||||| | |||| |||||||  ||||||||    
T  41042813 gcttacagagtgaagcattaattggctggaacttgtagagatg 41042855  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 320
Target Start/End: Original strand, 41036911 - 41037060
Alignment:
Q  171 aatacattgtttcacttgatacagaatcaagaagggtgacatgtaaattatgcaagcttccatttacaagaagtgcttacgtagtgaagcatgatttgga 270  Q
    |||||| |||||| ||| || ||| |||||||||| |||  |||||||| ||  ||||| |||| |||||||||||||||  |||||| ||| | ||||     
T  41036911 aatacaatgtttctcttaatgcaggatcaagaaggatgaagtgtaaattttgtgagctttcattgacaagaagtgcttacagagtgaaacattaattggc 41037010  T
Q  271 tggaactaatagagatgtccagccatgtcgagtggtgactccatatgtca 320  Q
    |||||||| ||||||| | || || |||||| ||||  || |||||||||    
T  41037011 tggaactagtagagatattcaaccttgtcgaatggttccttcatatgtca 41037060  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 525
Target Start/End: Original strand, 50443581 - 50443624
Alignment:
Q  482 tgatgattatgacttattaatttagtttaatgtatttatgattt 525  Q
    |||||||||||||||||||||| || |||||||| |||||||||    
T  50443581 tgatgattatgacttattaattaagcttaatgtacttatgattt 50443624  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 522
Target Start/End: Original strand, 5520459 - 5520496
Alignment:
Q  485 tgattatgacttattaatttagtttaatgtatttatga 522  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  5520459 tgattatgacttattaattaagtttaatgtacttatga 5520496  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 525
Target Start/End: Original strand, 15660389 - 15660432
Alignment:
Q  482 tgatgattatgacttattaatttagtttaatgtatttatgattt 525  Q
    |||||||||||||||||||||| ||||| ||||| |||||||||    
T  15660389 tgatgattatgacttattaattaagtttgatgtacttatgattt 15660432  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 522
Target Start/End: Original strand, 4946419 - 4946456
Alignment:
Q  485 tgattatgacttattaatttagtttaatgtatttatga 522  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  4946419 tgattatgacttattaattaagtttaatgtacttatga 4946456  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 525
Target Start/End: Original strand, 22275053 - 22275096
Alignment:
Q  482 tgatgattatgacttattaatttagtttaatgtatttatgattt 525  Q
    |||||||||||||||||||||| ||||| ||||| |||||||||    
T  22275053 tgatgattatgacttattaattaagtttgatgtacttatgattt 22275096  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 525
Target Start/End: Original strand, 1915969 - 1916012
Alignment:
Q  482 tgatgattatgacttattaatttagtttaatgtatttatgattt 525  Q
    |||||||||||||||||||||| ||||||||| | |||||||||    
T  1915969 tgatgattatgacttattaattaagtttaatgcacttatgattt 1916012  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 513
Target Start/End: Original strand, 3088524 - 3088554
Alignment:
Q  483 gatgattatgacttattaatttagtttaatg 513  Q
    |||||||||||||||||||||||||||||||    
T  3088524 gatgattatgacttattaatttagtttaatg 3088554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 517
Target Start/End: Original strand, 51227974 - 51228024
Alignment:
Q  467 tatgtatttgaaaaatgatgattatgacttattaatttagtttaatgtatt 517  Q
    |||| ||||||  ||||||||||||||  ||||||||||||||||||||||    
T  51227974 tatgaatttgaggaatgatgattatgatatattaatttagtttaatgtatt 51228024  T

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