View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1858-Insertion-12 (Length: 511)
Name: NF1858-Insertion-12
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858-Insertion-12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 8 - 407
Target Start/End: Original strand, 10825284 - 10825685
Alignment:
| Q |
8 |
aatttcttttccttctgatttcatgaacatatctacataaacaaacgatacatgcaaatatagtattagtttgatatgtaaaaactgaaattttagtaag |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10825284 |
aatttcttttccttctgatttcatgaacatatctacataaataaacgatacatgcaaacatagtattagtttgatatgtaaaaactgaaattttagtaag |
10825383 |
T |
|
| Q |
108 |
agtaaacttgtttaaagttaatcatcaaaataaatcatagataattttctcaagtagctcattcatttcaaacctgatgcaaagatgaggaaagtcaata |
207 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10825384 |
agtaaacttgtttaaagttaatcattaaaataaatcatagataattttctcaagtagctcattcatttcaaacctgatgcaaagatgaggaaagccaata |
10825483 |
T |
|
| Q |
208 |
aatatacgattacaagagcactaatctttgtacttgcagtacccatcttgtaaatataacatattataagttatacatg--tggtatttatatatgcata |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10825484 |
aatatacgattacaagagcactaatctttgtacttgcagtacccatcttataaatataacatattataagttatacatgtctggtatttatatatgcata |
10825583 |
T |
|
| Q |
306 |
tggtgagactccaccttgaccatcttaattgttttctattaacataataaattaaaaaagatacgtttactttatttaataaagaaattactttaataca |
405 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10825584 |
tggtgagacttcaccttgaccgtcttaattgttttctattaacataataaattaaaaaagatacgtttactttatttaataaagaaattactttaataca |
10825683 |
T |
|
| Q |
406 |
tt |
407 |
Q |
| |
|
|| |
|
|
| T |
10825684 |
tt |
10825685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 105 - 343
Target Start/End: Original strand, 10803209 - 10803441
Alignment:
| Q |
105 |
aagagtaaacttgtttaaagttaatcatcaaaataaatcatagataattttct-caagtagctcattcatttcaaacctgatgcaaagatgaggaaagtc |
203 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||| || |||| |||||||| | || | | ||||| |||||||||||||||||||||| ||||| | |
|
|
| T |
10803209 |
aagagtaaacttgtttaaagttaaatatcataatcaagcatatataattttttgcactttgttcatttgtttcaaacctgatgcaaagatggtgaaagcc |
10803308 |
T |
|
| Q |
204 |
aataaatatacgattacaagagcactaatctttgtacttgcagtacccatcttgtaaatataacatattataagttatacatgtgg--tatttatatatg |
301 |
Q |
| |
|
||||| |||| ||| ||||||| |||||||||| || |||||||| ||||||||||||||||| |||||||| |||||||||| | |
|
|
| T |
10803309 |
aataagtatatcgttatgagagcacaaatctttgta------gtgtccatcttgaaaatataacatattatac---atacatgtatattatttatatacg |
10803399 |
T |
|
| Q |
302 |
catatggtgagactccaccttgaccatcttaattgttttcta |
343 |
Q |
| |
|
|||||||||||||||||||||||| | |||||| ||||||| |
|
|
| T |
10803400 |
catatggtgagactccaccttgactgtattaattattttcta |
10803441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 325
Target Start/End: Original strand, 10810025 - 10810239
Alignment:
| Q |
105 |
aagagtaaacttgtttaaagttaatcatcaaaataaatcatagataattttct-caagtagctcattcatttcaaacctgatgcaaagatgaggaaagtc |
203 |
Q |
| |
|
|||||||||||||||||||| ||| |||| ||| || || | |||||||| | || | | ||||| |||||||||||||||||||||| ||||| | |
|
|
| T |
10810025 |
aagagtaaacttgtttaaagctaaatatcataatcaagcaaatataattttttgcactttgttcatttgtttcaaacctgatgcaaagatggtgaaagcc |
10810124 |
T |
|
| Q |
204 |
aataaatatacgattacaagagcactaatctttgtacttgcagtacccatcttgtaaatataacatattataagttatacatgtgg--tatttatatatg |
301 |
Q |
| |
|
||||| |||| ||| ||||||| |||||||||| || |||||||| ||||||||||||||||| |||||||| |||||||||| | |
|
|
| T |
10810125 |
aataagtatatcgttatgagagcacaaatctttgta------gtgtccatcttgaaaatataacatattatac---atacatgtatattatttatatacg |
10810215 |
T |
|
| Q |
302 |
catatggtgagactccaccttgac |
325 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
10810216 |
catatggtgagactccaccttgac |
10810239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 333
Target Start/End: Original strand, 11059080 - 11059123
Alignment:
| Q |
290 |
tatttatatatgcatatggtgagactccaccttgaccatcttaa |
333 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||| |||| |
|
|
| T |
11059080 |
tatttatatatggatatggtgagactgcaccttgaccatattaa |
11059123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 333
Target Start/End: Original strand, 11076606 - 11076648
Alignment:
| Q |
291 |
atttatatatgcatatggtgagactccaccttgaccatcttaa |
333 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||| |||| |
|
|
| T |
11076606 |
atttatatatggatatggtgagactgcaccttgaccatattaa |
11076648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 10735680 - 10735640
Alignment:
| Q |
13 |
cttttccttctgatttcatgaacatatctacataaacaaac |
53 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||| |||||| |
|
|
| T |
10735680 |
cttttccttctaatttcatgcacatatctacatatacaaac |
10735640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University