View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858-Insertion-13 (Length: 594)
Name: NF1858-Insertion-13
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858-Insertion-13 |
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Alignment Details
Target: chr3 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 8 - 526
Target Start/End: Complemental strand, 10464413 - 10463895
Alignment:
| Q |
8 |
aagaacttgttgcatgttattcatctaggctaagtcatggtttacataattacataggcactctgattagttaaggtctaaaggactcgaataattatca |
107 |
Q |
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| T |
10464413 |
aagaacttgttgcatgttattcatctaggctaagtcatggtttacataattacataggcactctgattagttaaggtctaaaggacttgaataattatca |
10464314 |
T |
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| Q |
108 |
attttaagtcgtacaagatattcatatgaacacgtaatgtacttgatcaaatgtatggaattaccaatgatatgaggtcatcaaattaaacaattatggg |
207 |
Q |
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| T |
10464313 |
attttaagtcgtacaagatattcatatgaacacgtaatgtacttgatcaaatgtatggaattaccaatgatatgaggtcatcaaattaaacaattatggg |
10464214 |
T |
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| Q |
208 |
attatgatatatcattgaagttatttgtcttttccatgaaacttatttgtgttttagtcgtataatcatcccttcagtgatgttattattagttaatata |
307 |
Q |
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| T |
10464213 |
attatgatatatcattgaagttatttgtcttttccatgaaacttatttgtgttttagtcgtataatcatcccttcagtgatgttattattagttaatata |
10464114 |
T |
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| Q |
308 |
ttttgtcttgttaagcgatgtatacttgtctgattcaataattccatgatgaataaaataatgaaacagaggtggaaattggaagccattgagaagtgtg |
407 |
Q |
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| T |
10464113 |
ttttgtcttgttaagcgatgtatacttgtctgattcaataattccatgatgaataaaataatgaaacagaggtggaaattggaagccattgagaagtgtg |
10464014 |
T |
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| Q |
408 |
atgtaatggtgtacaccaagatctttctgaagtttccgtataggttttggccatgtggacccgaaaaggaattcttcatgtatgctcacgagcagagagg |
507 |
Q |
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| T |
10464013 |
atgtaatggtgtacaccaagatctttctgaagtttccgtataggttttggccatgtggacccgaaaaggaattcttcatgtatgctcacgagcagagagg |
10463914 |
T |
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| Q |
508 |
ctattacacattttggcag |
526 |
Q |
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| T |
10463913 |
ctattacacattttggcag |
10463895 |
T |
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