View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858-Insertion-14 (Length: 467)
Name: NF1858-Insertion-14
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858-Insertion-14 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 8 - 467
Target Start/End: Original strand, 8335951 - 8336404
Alignment:
| Q |
8 |
cttatagtttaacatattatttgctcctattctcaaattgattgcactaaattatattgaccttacattcataatttgatggggtcaactgagtgaaaat |
107 |
Q |
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| T |
8335951 |
cttatagtttaacatatt---tgctcctattctcaaattgattgcactaaattatattgaccttacattcat---ttgatggggtcaactgagtgaaaat |
8336044 |
T |
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| Q |
108 |
gctacaaaacaataatattcattccattttgcttctcaggggaccaaaagcgaccaacaaagatttggagatataatcaggagaggagagagagtgaatg |
207 |
Q |
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| T |
8336045 |
gctacaaaacaataatattcattccattttgcttctcaggggaccaaaagcgaccaacaaagatttggagatataatcaggagaggagagagagtgaatg |
8336144 |
T |
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| Q |
208 |
aagacacaatactgtccccatcaacaaactcaggaggtccaaacacaaatgatgtctctcttgagctcaaactcaactgaaatcatgcttcatgcacaaa |
307 |
Q |
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| T |
8336145 |
aagacacagtactgtccccatcaacaaactcaggaggtccaaacacaaatgatgtctctcttgagctcaaactcaactgaaatcatgcttcatgcacaaa |
8336244 |
T |
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| Q |
308 |
atnnnnnnnnncaagtctaagtttaatccttttatatctcgatggtagaattttaatgttggttttggaatgaacttgtaatatcaatgatggttttgtt |
407 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8336245 |
ataaaaaaaaacaagtctaagtttaatccttttatatctcgatggtagaactttaatgttggttttggaatgaacttgtaatattaatgatggttttgtt |
8336344 |
T |
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| Q |
408 |
tagttatcctaagaacataatatatgcatgcatgtggatcatagtatatgatgaattata |
467 |
Q |
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| T |
8336345 |
tagttaacataagaacataatatatgcatgcatgtggatcatagtatatgatgaattata |
8336404 |
T |
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