View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1858-Insertion-15 (Length: 405)

Name: NF1858-Insertion-15
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1858-Insertion-15
NF1858-Insertion-15
[»] chr6 (4 HSPs)
chr6 (7-177)||(7326126-7326296)
chr6 (258-396)||(7326481-7326612)
chr6 (193-258)||(7326393-7326453)
chr6 (200-243)||(6922703-6922746)
[»] chr4 (5 HSPs)
chr4 (179-243)||(35130658-35130723)
chr4 (193-243)||(13538317-13538367)
chr4 (201-242)||(49479453-49479494)
chr4 (179-243)||(17882291-17882355)
chr4 (180-243)||(35010431-35010495)
[»] scaffold0166 (1 HSPs)
scaffold0166 (200-244)||(35852-35896)
[»] chr7 (2 HSPs)
chr7 (179-243)||(30746010-30746074)
chr7 (193-243)||(9667293-9667343)
[»] chr5 (1 HSPs)
chr5 (200-244)||(24793469-24793513)
[»] chr2 (1 HSPs)
chr2 (200-240)||(29097888-29097928)
[»] chr3 (3 HSPs)
chr3 (179-245)||(32594558-32594625)
chr3 (200-243)||(52093594-52093637)
chr3 (200-243)||(52093749-52093792)
[»] chr8 (1 HSPs)
chr8 (210-244)||(2276274-2276308)


Alignment Details
Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 7326126 - 7326296
Alignment:
Q  7 aacactcacctatattcccaacaaaattgaggatgtttataacaaaataagtatttttatttcaaaagcaaaataaggcataatctaaaatgttgtttgc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7326126 aacactcacctatattcccaacaaaattgaggatgtttataacaaaataagtatttttatttcaaaagcaaaataaggcctaatctaaaatgttgtttgc 7326225  T
Q  107 tgcaaataagtgaaattagcttcatttcataccgaaaaatcaagcacattgacaacgcaagctattagcac 177  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7326226 tgcaaataagtgaagttagcttcatttcataccgaaaaatcaagcacattgacaacgcaagctattggcac 7326296  T

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Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 258 - 396
Target Start/End: Original strand, 7326481 - 7326612
Alignment:
Q  258 acaaacaaaaatggcatcagtaaatgttttttccatgatataaataaggatagttttatcccttcatgtcagttagctacatacatacatgtaatgtaac 357  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||       ||||||||||||||||||||    
T  7326481 acaaacaaaaatggcatcagtaaatgttttttccatgacataaataaggataattttatcccttcatgtcagt-------atacatacatgtaatgtaac 7326573  T
Q  358 aaatttagacaaatgttcataaaacaaatagcaacaaag 396  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7326574 aaatttagacaaatgttcataaaacaaatagcaacaaag 7326612  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 258
Target Start/End: Original strand, 7326393 - 7326453
Alignment:
Q  193 ccctactcaaattattcctgatagctaccaactgaactatacttacgggacacacttatttcttca 258  Q
    |||| |||||||||| |||| ||||||||||||||     ||||||||||||||||||||||||||    
T  7326393 ccctgctcaaattatccctggtagctaccaactga-----acttacgggacacacttatttcttca 7326453  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 243
Target Start/End: Original strand, 6922703 - 6922746
Alignment:
Q  200 caaattattcctgatagctaccaactgaactatacttacgggac 243  Q
    |||||||||| || |||||||||||||||||| |||||||||||    
T  6922703 caaattattcatggtagctaccaactgaactacacttacgggac 6922746  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 35130658 - 35130723
Alignment:
Q  179 ggttcgaaccccggccc-tactcaaattattcctgatagctaccaactgaactatacttacgggac 243  Q
    ||||||||||||||||| | | ||||||||  ||| |||||||||||||||||| |||||||||||    
T  35130658 ggttcgaaccccggcccctgcacaaattatctctggtagctaccaactgaactacacttacgggac 35130723  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 13538317 - 13538367
Alignment:
Q  193 ccctactcaaattattcctgatagctaccaactgaactatacttacgggac 243  Q
    |||||| ||||||||  |||||||||||||||||| ||| |||||||||||    
T  13538317 ccctacacaaattatctctgatagctaccaactgagctacacttacgggac 13538367  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 49479494 - 49479453
Alignment:
Q  201 aaattattcctgatagctaccaactgaactatacttacggga 242  Q
    |||||||| |||||||||||||||||||||| ||||| ||||    
T  49479494 aaattatttctgatagctaccaactgaactacacttatggga 49479453  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 17882291 - 17882355
Alignment:
Q  179 ggttcgaaccccggccctactcaaattattcctgatagctaccaactgaactatacttacgggac 243  Q
    ||||||||||| | |||| | |||||||| | ||| |||||| |||||||||| |||||||||||    
T  17882291 ggttcgaaccctgcccctgcacaaattatccatgaaagctactaactgaactacacttacgggac 17882355  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 35010431 - 35010495
Alignment:
Q  180 gttcgaaccccggc-cctactcaaattattcctgatagctaccaactgaactatacttacgggac 243  Q
    |||||||||||| | ||| | ||||||||  |||||||||||||||||| ||| |||||||||||    
T  35010431 gttcgaaccccgactcctgcacaaattatctctgatagctaccaactgagctaaacttacgggac 35010495  T

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Target: scaffold0166 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 35896 - 35852
Alignment:
Q  200 caaattattcctgatagctaccaactgaactatacttacgggaca 244  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||    
T  35896 caaattatctctgatagctaccaactgaactatacttacgagaca 35852  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 30746010 - 30746074
Alignment:
Q  179 ggttcgaaccccggccctactcaaattattcctgatagctaccaactgaactatacttacgggac 243  Q
    ||||| ||||||| |||| | ||||||||||||||||| ||||||||||  |||||||| |||||    
T  30746010 ggttcaaaccccgcccctgcacaaattattcctgatagttaccaactgagttatacttatgggac 30746074  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 9667293 - 9667343
Alignment:
Q  193 ccctactcaaattattcctgatagctaccaactgaactatacttacgggac 243  Q
    |||||| ||||||||  |||||||||||||||||| ||| |||||||||||    
T  9667293 ccctacacaaattatctctgatagctaccaactgagctacacttacgggac 9667343  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 24793513 - 24793469
Alignment:
Q  200 caaattattcctgatagctaccaactgaactatacttacgggaca 244  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||    
T  24793513 caaattatctctgatagctaccaactgaactatacttacgagaca 24793469  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 29097928 - 29097888
Alignment:
Q  200 caaattattcctgatagctaccaactgaactatacttacgg 240  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  29097928 caaattattcctgatagttaccaactgaactacacttacgg 29097888  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 32594625 - 32594558
Alignment:
Q  179 ggttcgaaccccggcc-ctactcaaattattcctgatagctaccaactgaactatacttacgggacac 245  Q
    ||||||||||||| || |||| ||||||||||||  || ||||||||||||||| |||||||| ||||    
T  32594625 ggttcgaaccccgaccactacacaaattattcctattaactaccaactgaactacacttacggaacac 32594558  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 243
Target Start/End: Complemental strand, 52093637 - 52093594
Alignment:
Q  200 caaattattcctgatagctaccaactgaactatacttacgggac 243  Q
    |||||||| ||||||||||||||||||| | |||||||||||||    
T  52093637 caaattatccctgatagctaccaactgagccatacttacgggac 52093594  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 243
Target Start/End: Complemental strand, 52093792 - 52093749
Alignment:
Q  200 caaattattcctgatagctaccaactgaactatacttacgggac 243  Q
    |||||||| ||||||||||||||||||| | |||||||||||||    
T  52093792 caaattatccctgatagctaccaactgagccatacttacgggac 52093749  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 244
Target Start/End: Complemental strand, 2276308 - 2276274
Alignment:
Q  210 ctgatagctaccaactgaactatacttacgggaca 244  Q
    |||||||||||||||||||||||||||||| ||||    
T  2276308 ctgatagctaccaactgaactatacttacgagaca 2276274  T

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