View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858-Insertion-18 (Length: 440)
Name: NF1858-Insertion-18
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858-Insertion-18 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 114 - 402
Target Start/End: Original strand, 36363053 - 36363341
Alignment:
| Q |
114 |
ttggggaattgggaaatattataaggcttagttttttggtccctattttgactaaatatcaatttggatctttctgtatttaattatttcaattgatctt |
213 |
Q |
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| T |
36363053 |
ttggggaattgggaaatattataaggcttagttttttggtccctattttgactaaatctcaatttggatctttctgtatttaattatttcaatccatctt |
36363152 |
T |
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| Q |
214 |
attttgattttctataatcggtcacgacttaatttaac-accttataagacaccattttgatctaatttattgtcacatcattaaattgaatggtcaaaa |
312 |
Q |
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| T |
36363153 |
attttgattttctatgatccatcacgacttaatttaacaaccctataagacaccattttgatctaatttattgtcacatcattaaattgaatggtcaaaa |
36363252 |
T |
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| Q |
313 |
ttatggaaatggagaatcaaaattgccaattaaaaatagagtgaccataatagaaaatttggctaagatagggaatcacacttcaattaa |
402 |
Q |
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| T |
36363253 |
ttatggaaatggagaat-aaaattgccaattaaaaatagagtgaccataatagaaaatttggctaaaatagggaatcaaacttcaattaa |
36363341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 36362953 - 36363029
Alignment:
| Q |
7 |
actagcatcatggttctgttttagttctgtgcatgctatattatgatttcactattaaggaccatgcttctaggtgg |
83 |
Q |
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| T |
36362953 |
actagcatcatggttctgttttagttctgtgcatgctatattatgatttcactattaaggaccatgcttctaggtgg |
36363029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 318
Target Start/End: Complemental strand, 47475011 - 47474968
Alignment:
| Q |
275 |
ctaatttattgtcacatcattaaattgaatggtcaaaattatgg |
318 |
Q |
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| T |
47475011 |
ctaatttattgtcacatcattaaattaaatgattaaaattatgg |
47474968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 314
Target Start/End: Complemental strand, 40404412 - 40404371
Alignment:
| Q |
273 |
atctaatttattgtcacatcattaaattgaatggtcaaaatt |
314 |
Q |
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| T |
40404412 |
atctaatatattgtcacgtcattaaattggatggtcaaaatt |
40404371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 316
Target Start/End: Original strand, 6168797 - 6168837
Alignment:
| Q |
276 |
taatttattgtcacatcattaaattgaatggtcaaaattat |
316 |
Q |
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| T |
6168797 |
taatttattgtcacgtcattaaattggatggttaaaattat |
6168837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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