View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1858-Insertion-19 (Length: 368)
Name: NF1858-Insertion-19
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858-Insertion-19 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 8 - 368
Target Start/End: Original strand, 45694893 - 45695253
Alignment:
| Q |
8 |
ctttcaacttttcgtgatgatttggattttgaatccttgcagcttagttcttgggttcgttggtatgctgctgttcttgaacaacttttaactgtttcaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45694893 |
ctttcaacttttcgtgatgatttggattttgaatccttgcagcttagttcttgggttcgttggtatgctgctgttcttgaacaacttttaactgtttcaa |
45694992 |
T |
|
| Q |
108 |
gaattttaggttattatctaaattctaataacaatttgtcnnnnnnngattctttgattttgaacgcatcgaatgctgatttgttgtataaactagaatg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45694993 |
gaattttaggttattatctaaattctaataacaatttgtcaaaaaaagattctttgattttgaacgcatcgaatgctgatttgttgtataaactagaatg |
45695092 |
T |
|
| Q |
208 |
tttggttgttttcgtcgagcaaattagtggtgtaccggaatctttggaacttcagaagactgagctggtttatgaaattgtgagaatgattggtgaagat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45695093 |
tttggttgttttcgtcgagcaaattagtggtgtaccggaatctttggaacttcagaagactgagctggtttatgaaattgtgagaatgattggtgaagat |
45695192 |
T |
|
| Q |
308 |
tatagaaacgtgcaaggtgagattttgttgagattggaggaacttggtaagagaatggagg |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45695193 |
tatagaaacgtgcaaggtgagattttgttgagattggaggaacttggtaagagaatggagg |
45695253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University