View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858-Insertion-2 (Length: 806)
Name: NF1858-Insertion-2
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858-Insertion-2 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 697; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 8 - 806
Target Start/End: Original strand, 30749659 - 30750465
Alignment:
| Q |
8 |
acaaattattaatttgttatgcaactcaaagtaaattcctaagccaagattgttgacatttttctacccaaaacacaccctagatgatgataactttgaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30749659 |
acaaattattaatttgttatgcaactcaaagtaaattcctaagccaagattgttgacatttttctacccaaaacacaccctagatgatcataactttgaa |
30749758 |
T |
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| Q |
108 |
cgcttgtgagaactctctccatggtgcaccaaaggtccacaaatcttagagcctccaactttacattgtgatcgttatctgattccaaaatacagaaaaa |
207 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||| |||||||| |
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| T |
30749759 |
cgcttgtgagaactctctccaaggtgcaccaaaggtccacaaatctcagagcctccaactttacactgtgatcattatctgattccaaaatgcagaaaaa |
30749858 |
T |
|
| Q |
208 |
tgttacatatatagaacatgtatcaaatctactaaaagataatagtgcgacatccaaatagaaaacaaatattaaaatagggtacacaaaatgtcaacac |
307 |
Q |
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||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
30749859 |
ggttacgtatatataacatgtatcaagtctactaaaagataatagtgcgacatccaaatagaaaacatatattaaaatagggtacacaaaatgtcaacac |
30749958 |
T |
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| Q |
308 |
gcaaaacatagtcgattcaataaatgcgcgcgcacatgcacaaaccgaccccaatgaaccaatacatcaggattttctaccatgtgtaaacacctttaaa |
407 |
Q |
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|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30749959 |
acaaaacatagtcgattcaataaatgcgctcgcacacgcacaaaccgaccccaatgaaccaatacatcatgattttctaccatgtgtaaacacctttaaa |
30750058 |
T |
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| Q |
408 |
aatcatttgctagcatatcaaatattctacaccaaatattttaattttacacattaacttaattcttttaaaaccaacaaattgtcctaaaaattatttt |
507 |
Q |
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| T |
30750059 |
aatcagttgctagcatatcaaatattctacaccaaattttttaattttacacattaacttaattcttttaaaaccaacaaattgtcctaaaaattatttt |
30750158 |
T |
|
| Q |
508 |
taaaacc----aaatcgatactccaaaattgttttcaaccaatagaacactacaagtattacactaccaacaaaagtgattttcggctatatatgtttaa |
603 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30750159 |
taaaaccaattaaatcgatactccaaaattgttttcaaccaatagaacactacaagtattacactaccaacaaaagtgattttcggctatatatgtttaa |
30750258 |
T |
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| Q |
604 |
caatgtagaataatactacaaat----gcatgtgatgagagtaaaatttggaatttacaataataaggtcaagatatatgttcaacaagaaactgagagc |
699 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
30750259 |
caatgtagaataatactacaaattatggcatgtgatgagagtaaaatttggaatttactattataaggtcaagatatatgttcaacaagaaactgagagc |
30750358 |
T |
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| Q |
700 |
aattaggtaaaatttcttagtattacatatatattctccaaagcacaatttggaatcctaaccacttctatttccttttctctttctcagacgttctttc |
799 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30750359 |
aattaggtaaaatttcttagtattacatatatattctccaaagcacaatttggaatcctaaccacttctatttccttttctctttctcagacgttctttc |
30750458 |
T |
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| Q |
800 |
tctcttc |
806 |
Q |
| |
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||||||| |
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| T |
30750459 |
tctcttc |
30750465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 82 - 300
Target Start/End: Original strand, 30759991 - 30760215
Alignment:
| Q |
82 |
acaccctagatgatgataactttgaacgcttgtgagaactctctc--catggtgcaccaaaggtccacaaatcttagagcctccaactttacattgtgat |
179 |
Q |
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|||||||||||||| ||||||||| |||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
30759991 |
acaccctagatgatcataactttggacgcttgtgagaactctctctccaaggtgcaccaaaggtccacaaatctctgagcctccaactttacattgtcat |
30760090 |
T |
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| Q |
180 |
cgttatctgattccaaaatacagaaaaatgttacatata--tagaacatgtatcaaatctactaaaagataatagt--gcgacatccaaatagaaaacaa |
275 |
Q |
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| T |
30760091 |
cattatctgattccaaaatgtagaaaaaggttatatatatgtataacatgtatcaagtctactaaaacatatcagtacgtggcatccaaatagccaacaa |
30760190 |
T |
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| Q |
276 |
atattaaaatagggtacacaaaatg |
300 |
Q |
| |
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|||||||||| ||||| |||||||| |
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| T |
30760191 |
atattaaaatggggtatacaaaatg |
30760215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 401 - 435
Target Start/End: Original strand, 30760395 - 30760429
Alignment:
| Q |
401 |
ctttaaaaatcatttgctagcatatcaaatattct |
435 |
Q |
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| T |
30760395 |
ctttaaaaatcatttgctaccatatcaaatattct |
30760429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 30759941 - 30759990
Alignment:
| Q |
8 |
acaaattattaatttgttatgcaactcaaagtaaattcctaagccaagat |
57 |
Q |
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|||||| ||||||||| |||| ||||||||||||| |||| ||||||||| |
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| T |
30759941 |
acaaatgattaatttgatatgaaactcaaagtaaagtcctgagccaagat |
30759990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 167
Target Start/End: Complemental strand, 29823570 - 29823473
Alignment:
| Q |
71 |
ctacccaaa-acacaccctagatgatgataactttgaacgcttgtgagaactctctccatggtgcaccaaaggtccacaaatcttagagcctccaact |
167 |
Q |
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| T |
29823570 |
ctacccaaagacacaccctagctggtcataactttggacacttgtgagaaatctcaccaaggcgcaccaaaggtccacatatctcggagcctccaact |
29823473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 2188774 - 2188704
Alignment:
| Q |
97 |
ataactttgaacgcttgtgagaactctctccatggtgcaccaaaggtccacaaatcttagagcctccaact |
167 |
Q |
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|||||||||||| |||||||||| |||| ||| || ||| |||||||||||| |||| |||||||||||| |
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| T |
2188774 |
ataactttgaacacttgtgagaaatctcaccaaggcgcatcaaaggtccacatatctcggagcctccaact |
2188704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 167
Target Start/End: Original strand, 19632105 - 19632202
Alignment:
| Q |
71 |
ctacccaaa-acacaccctagatgatgataactttgaacgcttgtgagaactctctccatggtgcaccaaaggtccacaaatcttagagcctccaact |
167 |
Q |
| |
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||||||||| ||||| ||||| || | ||||||||| || ||||||| || |||| ||| || |||||||||||||||| |||| |||||||||||| |
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| T |
19632105 |
ctacccaaagacacatcctagctggtcataactttggacacttgtgaaaaatctcaccaaggcgcaccaaaggtccacatatctcggagcctccaact |
19632202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 148
Target Start/End: Original strand, 20536631 - 20536709
Alignment:
| Q |
71 |
ctacccaaa-acacaccctagatgatgataactttgaacgcttgtgagaactctctccatggtgcaccaaaggtccaca |
148 |
Q |
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||||||||| ||||||||||| || | ||||||||| ||||||| |||||||||| | | || ||||| |||||||||| |
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| T |
20536631 |
ctacccaaagacacaccctagttggtcataactttggacgcttgcgagaactctcgctaaggcgcacccaaggtccaca |
20536709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 19216421 - 19216351
Alignment:
| Q |
97 |
ataactttgaacgcttgtgagaactctctccatggtgcaccaaaggtccacaaatcttagagcctccaact |
167 |
Q |
| |
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||||||||| || |||||||||| |||| ||| || |||||||||||||||| |||| |||||||||||| |
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| T |
19216421 |
ataactttggacacttgtgagaaatctcaccaaggcgcaccaaaggtccacatatctcggagcctccaact |
19216351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 5187348 - 5187395
Alignment:
| Q |
71 |
ctacccaaaacacaccctagatgatgataactttgaacgcttgtgaga |
118 |
Q |
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| T |
5187348 |
ctacccaaaacacaccctagctgatcttaactttgaacgcatgtgaga |
5187395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 166
Target Start/End: Original strand, 37626602 - 37626688
Alignment:
| Q |
80 |
acacaccctagatgatgataactttgaacgcttgtgagaactctctccatggtgcaccaaaggtccacaaatcttagagcctccaac |
166 |
Q |
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||||| ||||| || | ||||||||| || |||||||||| |||| || || |||||||||||||||| |||| ||||||||||| |
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| T |
37626602 |
acacatcctagctggtcataactttggacacttgtgagaaatctcaacaaggcgcaccaaaggtccacatatctcggagcctccaac |
37626688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 167
Target Start/End: Original strand, 41313132 - 41313229
Alignment:
| Q |
71 |
ctacccaaa-acacaccctagatgatgataactttgaacgcttgtgagaactctctccatggtgcaccaaaggtccacaaatcttagagcctccaact |
167 |
Q |
| |
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||||||||| ||||| ||||| || | ||||||||| || |||||||||| |||| || || ||| |||||||||||| |||| |||||||||||| |
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| T |
41313132 |
ctacccaaagacacatcctagttggtcataactttggacacttgtgagaaatctcaacaaggcgcatcaaaggtccacatatctcggagcctccaact |
41313229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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