View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858-Insertion-20 (Length: 299)
Name: NF1858-Insertion-20
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858-Insertion-20 |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 7 - 299
Target Start/End: Original strand, 53104943 - 53105235
Alignment:
| Q |
7 |
aatagacattgttttctttatcatcaatacacaaaactcttggggcattagctcgctttcttttacctcttggtcctttcggataagcccaagaatcaac |
106 |
Q |
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| T |
53104943 |
aatagacattgttttctttatcatcaatacacaaaactcttggggcattagcttgctttcttttccctcttggtcctttcggataagcccaagaatcaac |
53105042 |
T |
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| Q |
107 |
ctttgaaaaactgctggtaactgatatatgtggactaacttcaacctggtggttcaaactgctcttcctagccacgccatatgagctagtagataaatta |
206 |
Q |
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| T |
53105043 |
ctttgaaaaactgctggtaactgatatatgtggactaacttcaacctggtggttcaaactgctcttcctagccacgccatatgagctagtagataaatta |
53105142 |
T |
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| Q |
207 |
agacatttagtcttaacatctgaagccactggatctgccactaaagaatttcccttcctgttatatctaataatatcctcctcaacattattg |
299 |
Q |
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| T |
53105143 |
agacatttagtcttaacatctgaagccactggatctgccactaaacactttcccttcctgttatatctaataatatcctcctcaacattattg |
53105235 |
T |
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Back To:
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Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 299
Target Start/End: Original strand, 43917650 - 43917942
Alignment:
| Q |
7 |
aatagacattgttttctttatcatcaatacacaaaactcttggggcattagctcgctttcttttacctcttggtcctttcggataagcccaagaatcaac |
106 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
43917650 |
aatagacattgttttctttatcatcaatacccaaaactcttggggcattagctcgctttcttttacctcttggtccttttggacaagcccaagaatcaat |
43917749 |
T |
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| Q |
107 |
ctttgaaaaactgctggtaactgatatatgtggactaacttcaacctggtggttcaaactgctcttcctagccacgccatatgagctagtagataaatta |
206 |
Q |
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| T |
43917750 |
ctttgaaaaactgcttgtaactgatatctgcggactaaattcaatctggtggttcaaactgctcttcctagccactccatatgaggtagtagataaatta |
43917849 |
T |
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| Q |
207 |
agacatttagtcttaacatctgaagccactggatctgccactaaagaatttcccttcctgttatatctaataatatcctcctcaacattattg |
299 |
Q |
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| T |
43917850 |
agacgtttagtcttaacgtctgacaccactggatctgccactaaacactttcccttcctcttatatctaattatatcctcttcaacattattg |
43917942 |
T |
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