View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858-Insertion-21 (Length: 271)
Name: NF1858-Insertion-21
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858-Insertion-21 |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 8 - 271
Target Start/End: Complemental strand, 883860 - 883597
Alignment:
| Q |
8 |
tgaatgaagcgattccaacaaagacgatgattgatttggtttcattctcaaactcaaattttgatccaaagaaatggatcaacacagcatgtcacagtcg |
107 |
Q |
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| T |
883860 |
tgaatgaagcgattcccacaatgacgatgattgatttagtttcattctcaaactcaaatttcgacccaaagaaatggatcaacacagcatgtaacagtcg |
883761 |
T |
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| Q |
108 |
acactctcaacacctgatcgatttggagatgaaactccaaatgcttttcgaagaaatctccgcttctcttgaggaacaatcttccgctgctctccttcgt |
207 |
Q |
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| T |
883760 |
acactctcaacacctgatcgatttggagatgaaactccaaatgctttccgaggaaatctccgcttctcttgaggaacaatcttctgctgctctcctccga |
883661 |
T |
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| Q |
208 |
attcctcgcgcgacgagagatgttgttcgccttcgtgatgatgctggttctctccgttctgctg |
271 |
Q |
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| T |
883660 |
gttcctcgcgccactagagatgtcatttgccttcgtgatgacgctggttctctctgttctgctg |
883597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 16 - 271
Target Start/End: Complemental strand, 853671 - 853401
Alignment:
| Q |
16 |
gcgattccaacaaagacgatgattgatttggtttcattctcaaactcaaattttgatccaaagaaatggatcaacacagcatgtcacagtcgacactctc |
115 |
Q |
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| T |
853671 |
gcgattcccacaaagatgatggtagatttggttcaattctcaaactcaaatttcgacccaaagaaatggatcaacacagcatgtcacagtcgacactctc |
853572 |
T |
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| Q |
116 |
aaca---------------cctgatcgatttggagatgaaactccaaatgcttttcgaagaaatctccgcttctcttgaggaacaatcttccgctgctct |
200 |
Q |
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| T |
853571 |
aacagtcattagacaaacacctgatcgatttggagatgaaactccagatgctttccgaagaaatctccgcttctcttgaggaacaatcttctgctgctct |
853472 |
T |
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| Q |
201 |
ccttcgtattcctcgcgcgacgagagatgttgttcgccttcgtgatgatgctggttctctccgttctgctg |
271 |
Q |
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| T |
853471 |
cctccatgttcctcgtgccaccagagatgttgttcgtcttcgtgatgatgctggttctctccgttctgctg |
853401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 271
Target Start/End: Complemental strand, 239795 - 239640
Alignment:
| Q |
116 |
aacacctgatcgatttggagatgaaactccaaatgcttttcgaagaaatctccgcttctcttgaggaacaatcttccgctgctctccttcgtattcctcg |
215 |
Q |
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|||| ||| ||||||| |||||||||||||| ||| ||| ||| |||||| ||||||||||||| |||||| |||| || ||||| ||| | ||||| |
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| T |
239795 |
aacatctggtcgatttagagatgaaactccagatggtttccgaggaaatcgccgcttctcttgaagaacaaagcgccgccgcactcctccgtgtccctcg |
239696 |
T |
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| Q |
216 |
cgcgacgagagatgttgttcgccttcgtgatgatgctggttctctccgttctgctg |
271 |
Q |
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| T |
239695 |
cgccactcgtgatgtcatccgtctccgtgatgacgccgtttctctccgttctgctg |
239640 |
T |
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