View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858-Insertion-23 (Length: 294)
Name: NF1858-Insertion-23
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858-Insertion-23 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 8 - 294
Target Start/End: Complemental strand, 43341734 - 43341448
Alignment:
| Q |
8 |
atttgaacatagccaagttgattttcaaggtcaagattttcagtttatcccatttggttttgggagaagaggatgccctggaatgaattttggagtaact |
107 |
Q |
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| T |
43341734 |
atttgaacatagccaagttgattttcaaggtcaagattttcagtttatcccatttggttttgggagaagaggatgccctggaatgaattttggagtaact |
43341635 |
T |
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| Q |
108 |
actgttgaatatgtgcttgctagccttctttattggttcaattggaagctaccatttgaaacaaattctaatgaacaagatatagatatgagtgaggtat |
207 |
Q |
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| T |
43341634 |
actgttgaatatgtgcttgctagccttctttattggttcaattggaagctaccatttgaaacaaattctaatgaacaagatattgatatgagtgaggtat |
43341535 |
T |
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| Q |
208 |
ttggacttgttgtcacaaagaaagaaccacttcgccttaaaccaatagcattttcattttaatccactctccaagtattttgtggtc |
294 |
Q |
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| T |
43341534 |
ttggacttgttgtcacaaaaaaagaaccacttcgccttaaaccaatagcattttcattttaatctactctccaagtattttgtggtc |
43341448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 9 - 270
Target Start/End: Complemental strand, 43359443 - 43359185
Alignment:
| Q |
9 |
tttgaacatagccaagttgattttcaaggtcaagattttcagtttatcccatttggttttgggagaagaggatgccctggaatgaattttggagtaacta |
108 |
Q |
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| T |
43359443 |
tttgaacataaccaagttgattttaaaggtcaacattttcagtttatcccatttggttttgggagaagggggtgtcctggatataattttgcaacagctg |
43359344 |
T |
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| Q |
109 |
ctgttgaatatgtgcttgctagccttctttattggttcaattggaagctaccatttgaaacaaattctaatgaacaagatatagatatgagtgaggtatt |
208 |
Q |
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| T |
43359343 |
ttgttgaatatgtgattgctaaccttctttattggttcgattggaaactacc---tgaaacaaatgaaggtgaacaagatatagatatgagtgagatatt |
43359247 |
T |
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| Q |
209 |
tggacttgttgtcacaaagaaagaaccacttcgccttaaaccaatagcattttcattttaat |
270 |
Q |
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| T |
43359246 |
tggaatggctcttacaaagaaagaaccacttcaactcaaaccaatatcatttttattttaat |
43359185 |
T |
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