View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858-Insertion-24 (Length: 251)
Name: NF1858-Insertion-24
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858-Insertion-24 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 99 - 241
Target Start/End: Complemental strand, 889420 - 889278
Alignment:
| Q |
99 |
tcaagaaatatttcattttcataattgaaccaaaccttctttagctaagagggccaaaagttgccaccaatcctcaaaacacttcattcataacagagcc |
198 |
Q |
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| T |
889420 |
tcaagaaatatttcattttcacaattgaaccaaaccttctttagctaagagggccaaaagttgccaccaatcctcaaaacacttcattcataacagagcc |
889321 |
T |
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| Q |
199 |
tttttctcttgaaactcaacctgcagttttcaaacacaacaaa |
241 |
Q |
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| T |
889320 |
tttttctcttgaaactcaacctgcagttttcaaacacaacaaa |
889278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 889496 - 889454
Alignment:
| Q |
23 |
ttagttagtactcatccttcccttaaataaccctcctccattg |
65 |
Q |
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| T |
889496 |
ttagttagtactcatccttcccttaaataaccctcctccattg |
889454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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