View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858-Insertion-25 (Length: 517)
Name: NF1858-Insertion-25
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858-Insertion-25 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 7 - 517
Target Start/End: Original strand, 3543784 - 3544290
Alignment:
| Q |
7 |
attgttgacaccataatgtgatcatttttccgtattagccttatttcgatagctttttggtcttccgtgttgtctttgataagaatgtgttgctttgtga |
106 |
Q |
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| T |
3543784 |
attgttgacaccataatgtgatcatttttccgtatttgccttatttcgatagctttttggtcttccgtgttgtctttgataagaatgtgttgctttgtga |
3543883 |
T |
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| Q |
107 |
gtgttggagttagagaaaa-attctctaatcaatctgagaataggtttgcaccaagggttaactttggttccaatcatttctatgttggttctttactag |
205 |
Q |
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| T |
3543884 |
gtgttggagttagagaaaaaattctctaatcaatctgagaataggtttgcaccaagggttaactttggttccaatcatttctatgttggttctttactag |
3543983 |
T |
|
| Q |
206 |
taaactagaaggggttaagtcttgaaacagattatcaattaagcctctattaaagttgatatgacttaaatttgactcatatttatgaacttattagatc |
305 |
Q |
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| T |
3543984 |
taaactagaaggggttaagtcttgaaacagattattaattaagcctctattaaagttgatatgacttaaattggactcatatttatgaacttattagatc |
3544083 |
T |
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| Q |
306 |
tttatcagcttctgtttgattaaatgaatgttggttttccctgcatcaatatcacaccctttaatgaaatgaacaaatcatttaagcctcgctgcgtgat |
405 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3544084 |
tttatcagcttctgcttgattaaatgaatgttggttttccctgcatcaatatcacaccctttaatgaaatgaacaaatcatttaagcctcgctgcgtga- |
3544182 |
T |
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| Q |
406 |
acagtacaatttgtagatattagttgaaaaactattgacttaaaacttttctgaaatggctgcaggaggatagcataaatgaaagataatcaatgtgaag |
505 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
3544183 |
----tacaatttgtagatattagttgaaaaactattgacttaaaacttttctgaaatggctgcaggaggatagcagaaatgaaagaaaatcaatgtgaag |
3544278 |
T |
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| Q |
506 |
ttgctgtagaag |
517 |
Q |
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| T |
3544279 |
ttgctgtagaag |
3544290 |
T |
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