View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1858-Insertion-26 (Length: 292)
Name: NF1858-Insertion-26
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858-Insertion-26 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 49 - 292
Target Start/End: Complemental strand, 2245992 - 2245749
Alignment:
| Q |
49 |
gacaaatagcttgaattttagcatcaacagaattcttcaaagcattcaatctagtagaatctccgaaacccaacttagttggatctttcaaatttggaaa |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2245992 |
gacaaatagcttgaattttagcatcaacagaattcttcaaagcattcaatctagtagaatctccaaaacccaacttagttggatctttcaaatttggaaa |
2245893 |
T |
|
| Q |
149 |
atttaaacgcgcgtattcgcctcgaagcttataagctgcacgatcataagcataagctgcagcttcagcagtttcataagttccaagccaaactctcatt |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2245892 |
atttaaacgcgcgtattcgcctcgaagcttataagctgcacgatcataagcataagctgcagcttcagcagtttcataagttccaagccaaactctcatt |
2245793 |
T |
|
| Q |
249 |
ctattctgaggaagtctaatctcagccacccattttccccagtg |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2245792 |
ctattctgaggaagtctaatctcagccacccattttccccagtg |
2245749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 289
Target Start/End: Complemental strand, 25986063 - 25985952
Alignment:
| Q |
178 |
tataagctgcacgatcataagcataagctgcagcttcagcagtttcataagttccaagccaaactctcattctattctgaggaagtctaatctcagccac |
277 |
Q |
| |
|
||||||| || | ||||||||| |||| || |||||||||| ||| |||| |||||||||| || ||||||||| || ||||| |||||||| || |
|
|
| T |
25986063 |
tataagcagctctatcataagccaaagcagcttcttcagcagtgtcaaaagtaccaagccaaagccttgttctattcttgggtagtcttatctcagcaac |
25985964 |
T |
|
| Q |
278 |
ccattttcccca |
289 |
Q |
| |
|
|||||||||||| |
|
|
| T |
25985963 |
ccattttcccca |
25985952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 292
Target Start/End: Complemental strand, 33470041 - 33469923
Alignment:
| Q |
174 |
agcttataagctgcacgatcataagcataagctgcagcttcagcagtttcataagttccaagccaaactctcattctattctgaggaagtctaatctcag |
273 |
Q |
| |
|
||||||||||| || ||||||||| ||||||| ||||||| || ||| |||| |||||||| | ||| ||| |||| ||| ||||| ||||||| |
|
|
| T |
33470041 |
agcttataagcagctttatcataagccaaagctgcttcttcagctgtgtcaaaagtaccaagccataatcttgttcggttcttaggtagtcttatctcag |
33469942 |
T |
|
| Q |
274 |
ccacccattttccccagtg |
292 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
33469941 |
caacccattttccccagtg |
33469923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University