View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858-Insertion-27 (Length: 175)
Name: NF1858-Insertion-27
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858-Insertion-27 |
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| [»] scaffold0352 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 99; Significance: 4e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 25901087 - 25900981
Alignment:
| Q |
3 |
caacatattcatgaattgctactatgaaaataagtcaattttaatttttaagcattttatttgtgtctgtgtatgtgacctactatagttgtaaaattat |
102 |
Q |
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| T |
25901087 |
caacatattcatgaattgctactgtgaaaataagtcaattttaatttttaagcattttatttgtgtctgtgtatgtgaccaactatagttgtaaaattat |
25900988 |
T |
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| Q |
103 |
ctcttgg |
109 |
Q |
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||||||| |
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| T |
25900987 |
ctcttgg |
25900981 |
T |
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Target: chr3 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 29199381 - 29199486
Alignment:
| Q |
3 |
caacatattcatgaattgctactatgaaaataagtcaattttaatttttaagcattttatttgtgtctgtgtatgtgacctactatagttgtaaaattat |
102 |
Q |
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|||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||| || |
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| T |
29199381 |
caacatattcttgaattgcta-tgtgaaaataagtcaattttaatttttaagcattttatttgtttctgtgtgtgtgaccaactatagttgtaaaaccat |
29199479 |
T |
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| Q |
103 |
ctcttgg |
109 |
Q |
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||||||| |
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| T |
29199480 |
ctcttgg |
29199486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 4351338 - 4351436
Alignment:
| Q |
9 |
attcatgaattgctactatgaaaataagtcaattttaatttttaagcattttatttgtgtctgtgtatgtgacctactatagttgtaaaattatctcttg |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||| | ||||||||||||| |||||||| |
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| T |
4351338 |
attcatgaattgctactatgaaaataagtcaattttaatttttaagcatttta--tgtgtttttgtatgtgaccaaatatagttgtaaaaccatctcttg |
4351435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 15681 - 15583
Alignment:
| Q |
9 |
attcatgaattgctactatgaaaataagtcaattttaatttttaagcattttatttgtgtctgtgtatgtgacctactatagttgtaaaattatctcttg |
108 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| | ||||||||||| | ||||| ||||||| |||||||| |
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| T |
15681 |
attcatgaattgctactatgaaaataagccaattttaatttttaagcatttta--tgtgtttttgtatgtgaccaaatatagatgtaaaaccatctcttg |
15584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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