View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858-Insertion-28 (Length: 151)
Name: NF1858-Insertion-28
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858-Insertion-28 |
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| [»] chr1 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 122; Significance: 6e-63; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 6e-63
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 25579691 - 25579558
Alignment:
| Q |
18 |
tacacatgataatggtaattcatgatatcagttagtgtaatattcatctttacttcttgttttttaatcaatgagatgtctaggattcgaatcataaccc |
117 |
Q |
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| T |
25579691 |
tacacatgataatggtaattcatgatatcagttggtgtaatattcatctttacttcttgttttttaatcaatgagatgtctagggttcgaatcataaccc |
25579592 |
T |
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| Q |
118 |
ctgcatatataatgtaatgtccctagcaactgag |
151 |
Q |
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| T |
25579591 |
ctgcatatataatgtaatgtacctagcaactgag |
25579558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 94 - 151
Target Start/End: Complemental strand, 1836573 - 1836516
Alignment:
| Q |
94 |
tgtctaggattcgaatcataacccctgcatatataatgtaatgtccctagcaactgag |
151 |
Q |
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| T |
1836573 |
tgtctagggttcgaatcttgacccctgcatataatatgtaatatccctaccaactgag |
1836516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 114 - 151
Target Start/End: Complemental strand, 46206627 - 46206590
Alignment:
| Q |
114 |
acccctgcatatataatgtaatgtccctagcaactgag |
151 |
Q |
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| T |
46206627 |
acccctgcatatataatgcaatgtccctaccaactgag |
46206590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 45118689 - 45118653
Alignment:
| Q |
115 |
cccctgcatatataatgtaatgtccctagcaactgag |
151 |
Q |
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| T |
45118689 |
cccctgcatatataatgcaatgtccctaccaactgag |
45118653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 28; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 151
Target Start/End: Complemental strand, 7948436 - 7948385
Alignment:
| Q |
100 |
ggattcgaatcataacccctgcatatataatgtaatgtccctagcaactgag |
151 |
Q |
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| T |
7948436 |
ggattcgaaccccaacccctgcatatattatgtaatgtctctatcaactgag |
7948385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 28; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 9234148 - 9234089
Alignment:
| Q |
92 |
gatgtctaggattcgaatcataacccctgcatatataatgtaatgtccctagcaactgag |
151 |
Q |
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| T |
9234148 |
gatgtctagggttcgaaccctgacccctgcatatattatgtaatgtctcttccaactgag |
9234089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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