View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1858-Insertion-29 (Length: 133)

Name: NF1858-Insertion-29
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1858-Insertion-29
NF1858-Insertion-29
[»] chr1 (3 HSPs)
chr1 (7-129)||(31322183-31322307)
chr1 (21-129)||(31321339-31321447)
chr1 (51-129)||(34650812-34650890)
[»] chr8 (4 HSPs)
chr8 (34-129)||(2687463-2687558)
chr8 (35-129)||(27824119-27824213)
chr8 (72-124)||(27166985-27167037)
chr8 (78-123)||(17097344-17097389)
[»] chr5 (5 HSPs)
chr5 (34-123)||(37498522-37498611)
chr5 (44-129)||(13163522-13163606)
chr5 (42-129)||(38997634-38997722)
chr5 (66-129)||(28804049-28804111)
chr5 (52-129)||(37497520-37497596)
[»] chr7 (3 HSPs)
chr7 (60-129)||(3697875-3697944)
chr7 (30-129)||(28686772-28686870)
chr7 (78-126)||(35711282-35711330)
[»] chr6 (1 HSPs)
chr6 (30-129)||(28636123-28636223)
[»] chr4 (3 HSPs)
chr4 (61-129)||(8332215-8332283)
chr4 (72-123)||(7500711-7500762)
chr4 (72-123)||(7492680-7492731)
[»] chr2 (1 HSPs)
chr2 (21-105)||(12028460-12028538)


Alignment Details
Target: chr1 (Bit Score: 106; Significance: 2e-53; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 31322183 - 31322307
Alignment:
Q  7 acgaatgagaaccaaaaaggaccatacttttgtggaaatcatgagaattttacagttttatgatc--tatatgtgaatttatagcagaaatggaggatat 104  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  31322183 acgaatgagaaccaaaaagaaccatgcttttgtggaaatcatgagaattttacagttttatgatctatatatgtgaatttatagcagaaatggaggatat 31322282  T
Q  105 gggtagaagaaatggtgaaggtgtg 129  Q
    |||||||||||||||||||||||||    
T  31322283 gggtagaagaaatggtgaaggtgtg 31322307  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 5e-29
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 31321447 - 31321339
Alignment:
Q  21 aaaaggaccatacttttgtggaaatcatgagaattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggt 120  Q
    ||||| ||||| |||||||| |||||| || ||||||| ||||||||||||||| |||||| || || ||||||||||||||||||||||| ||||||||    
T  31321447 aaaagaaccatgcttttgtgaaaatcacgaaaattttatagttttatgatctatctgtgaaattttaacagaaatggaggatatgggtagacgaaatggt 31321348  T
Q  121 gaaggtgtg 129  Q
    |||||||||    
T  31321347 gaaggtgtg 31321339  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 34650890 - 34650812
Alignment:
Q  51 gaattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtg 129  Q
    ||||||||| || |||||||| || | ||||||| ||||||||||  ||| ||||||||||||||||||||||| ||||    
T  34650890 gaattttacggtattatgatcaatctatgaatttttagcagaaataaagggtatgggtagaagaaatggtgaagatgtg 34650812  T

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Target: chr8 (Bit Score: 60; Significance: 5e-26; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 2687558 - 2687463
Alignment:
Q  34 ttttgtggaaatcatgagaattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtg 129  Q
    ||||||| |||||||| |||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||    ||||||||||||||||    
T  2687558 ttttgtgaaaatcatgggaattttacagttttatgatctatgtatgaatttttagcagaaatggaggatatgggtattgaaaatggtgaaggtgtg 2687463  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 129
Target Start/End: Original strand, 27824119 - 27824213
Alignment:
Q  35 tttgtggaaatcatgagaattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtg 129  Q
    ||||| || ||||||||||||||| ||| ||||||||||| |||||||||  || |||| | || |||||| |||||| |||||||||| |||||    
T  27824119 tttgtagatatcatgagaattttaaagtattatgatctatttgtgaattttcagtagaattcgaagatatgagtagaataaatggtgaatgtgtg 27824213  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 27166985 - 27167037
Alignment:
Q  72 tatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaag 124  Q
    ||||| ||||||| ||||| ||||||| |||||||||||||||||||||||||    
T  27166985 tatatatgaatttttagcataaatggaagatatgggtagaagaaatggtgaag 27167037  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 17097389 - 17097344
Alignment:
Q  78 tgaatttatagcagaaatggaggatatgggtagaagaaatggtgaa 123  Q
    ||||||| |||||  |||||||||||||||||||||||||| ||||    
T  17097389 tgaatttttagcatgaatggaggatatgggtagaagaaatgttgaa 17097344  T

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Target: chr5 (Bit Score: 58; Significance: 8e-25; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 8e-25
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 37498522 - 37498611
Alignment:
Q  34 ttttgtggaaatcatgagaattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaa 123  Q
    ||||||| |||||||| |||||||||||||||||||||||| ||||||||| ||||| |||||||||| || | ||||||||||||||||    
T  37498522 ttttgtgaaaatcatgggaattttacagttttatgatctatttgtgaatttttagcataaatggaggacatagctagaagaaatggtgaa 37498611  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 13163522 - 13163606
Alignment:
Q  44 atcatgagaattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtg 129  Q
    |||||| |||||||| ||||||||||||||||||||||||| ||||| | ||||||||||| ||||||| |||| |||||||||||    
T  13163522 atcatgtgaattttaaagttttatgatctatatgtgaatttttagcaaatatggaggatataggtagaa-aaattgtgaaggtgtg 13163606  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 42 - 129
Target Start/End: Complemental strand, 38997722 - 38997634
Alignment:
Q  42 aaatcatgagaattttacagttttatgatctatatgtgaatttat-agcagaaatggaggatatgggtagaagaaatggtgaaggtgtg 129  Q
    |||||||  |||||| ||| ||||||||||||||||||| ||| | ||||||||| |||||||| |||||||||||||||||| |||||    
T  38997722 aaatcatcggaatttgacaattttatgatctatatgtgatttttttagcagaaatcgaggatataggtagaagaaatggtgaatgtgtg 38997634  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 129
Target Start/End: Complemental strand, 28804111 - 28804049
Alignment:
Q  66 atgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtg 129  Q
    ||||||| | ||||||||| |  ||||||||| |||||||||||||||||||||||||||||||    
T  28804111 atgatctctttgtgaatttttgacagaaatgg-ggatatgggtagaagaaatggtgaaggtgtg 28804049  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 37497596 - 37497520
Alignment:
Q  52 aattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtg 129  Q
    |||||||| | ||||||||||||  ||||| || ||||| ||||||| ||||||| |||||||||||||||| |||||    
T  37497596 aattttacggctttatgatctatcggtgaaatt-tagcataaatggatgatatggatagaagaaatggtgaaagtgtg 37497520  T

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Target: chr7 (Bit Score: 50; Significance: 5e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 3697944 - 3697875
Alignment:
Q  60 agttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtg 129  Q
    ||||||||||||||| ||||||||| ||||||||||||| ||||||||||||| |||| |||||||||||    
T  3697944 agttttatgatctatctgtgaatttttagcagaaatggacgatatgggtagaataaatagtgaaggtgtg 3697875  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 28686870 - 28686772
Alignment:
Q  30 atacttttgtggaaatcatgagaattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtg 129  Q
    ||||||||| ||||||||||  |||||||||||||||||||| || || ||||||  |||  |||||| ||||||| ||||||| |||| ||||||||||    
T  28686870 atacttttgaggaaatcatggaaattttacagttttatgatccatctgcgaattttcagctaaaatgggggatatgagtagaag-aatgatgaaggtgtg 28686772  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 35711282 - 35711330
Alignment:
Q  78 tgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggt 126  Q
    ||||||| |||||||||||||||| |||| ||||||||| |||||||||    
T  35711282 tgaatttttagcagaaatggaggaaatggatagaagaaacggtgaaggt 35711330  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 28636123 - 28636223
Alignment:
Q  30 atacttttgtggaaatcatgagaattttacagttttatgatctatat--gtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtg 127  Q
    |||||||||||||||||||| |||||||| ||||||||||| ||| |   |   ||| ||||| ||||||||||| |||||| |||||||||||||||||    
T  28636123 atacttttgtggaaatcatgggaattttatagttttatgatttatgttattttttttttagcaaaaatggaggat-tgggtaaaagaaatggtgaaggtg 28636221  T
Q  128 tg 129  Q
    ||    
T  28636222 tg 28636223  T

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Target: chr4 (Bit Score: 33; Significance: 0.0000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 8332215 - 8332283
Alignment:
Q  61 gttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtg 129  Q
    |||||||||  ||| ||||||||| ||||||||||||  ||||||| ||||||||||| |||| |||||    
T  8332215 gttttatgacatatttgtgaatttttagcagaaatggtcgatatggatagaagaaatgatgaaagtgtg 8332283  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 7500711 - 7500762
Alignment:
Q  72 tatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaa 123  Q
    |||||||| |||| |||||  ||||||||||||||||||||||||| |||||    
T  7500711 tatatgtggatttttagcatgaatggaggatatgggtagaagaaatagtgaa 7500762  T

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Target: chr4; HSP #3
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 7492680 - 7492731
Alignment:
Q  72 tatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaa 123  Q
    |||||||| | || |||||  ||||||||||||||||||||||||| |||||    
T  7492680 tatatgtggagttttagcatgaatggaggatatgggtagaagaaatagtgaa 7492731  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 12028538 - 12028460
Alignment:
Q  21 aaaaggaccatacttttgtggaaatcatgagaattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatg 105  Q
    ||||| |||||  |||||||||||||||  ||||||||||      |||||||| ||| ||||| ||||||||||||||||||||    
T  12028538 aaaagaaccatgtttttgtggaaatcatatgaattttaca------tgatctatttgtaaatttttagcagaaatggaggatatg 12028460  T

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