View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858-Insertion-3 (Length: 733)
Name: NF1858-Insertion-3
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 8 - 333
Target Start/End: Original strand, 44892686 - 44893010
Alignment:
| Q |
8 |
aagacaaatacttcatttaattgcaattacaagtgtacttgagtcaagttcagactaagttataattgtcacactcaccagctaagtctgccatcaagat |
107 |
Q |
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| T |
44892686 |
aagacaaatacttcatttaattgcaattacaagtgtacttgagtcaagttcagactaagttataattgtcacactcaccagctaagtttgccatcaagat |
44892785 |
T |
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| Q |
108 |
ttctgaattaattcccttcggagaaatctggcgatggtatttgcaaacaaaacttagcaaaggtcatcacaatcttctgtgtatgagccatagatccaat |
207 |
Q |
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| T |
44892786 |
ttctgaattaattcccttcggagaaatctggcgatgatatttgcaaacaaaacttagcaaaggtcatcacaatcttctgtgtatgagccatagatccaat |
44892885 |
T |
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| Q |
208 |
ttaagaagaaatcatattggcctaagaagaaaatttgaacacacatatatcctaaatttaaaagtgaaatgatatgctgacttaatttatatttcttttc |
307 |
Q |
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| T |
44892886 |
ttaagaagaaatcatattggcctaagaagaaaatttggacacacatatatgctaaatttaaaagtgaaatgatatgc-gacttaatttatatttcttttc |
44892984 |
T |
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| Q |
308 |
aattttatgatttatttgttcgtatc |
333 |
Q |
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| T |
44892985 |
aattttatgatttatgtgtttgtatc |
44893010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 327 - 550
Target Start/End: Original strand, 44893031 - 44893254
Alignment:
| Q |
327 |
tcgtatccaactaagaatttctcataaacaataagtaataattactttatataacaaaaactaataattcttttc-aaaaaagtattttaataaactaca |
425 |
Q |
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| T |
44893031 |
tcgtatccaactaagaatttatcataaacaataagtaataattactttatataacaaaaactaataattcttttcaaaaaaagtattttaataagctaca |
44893130 |
T |
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| Q |
426 |
tcataccttgcataataaagtaaaaagttaaatatatttttgttccttataaannnnnnnnnnnnnnngttatagtcatcctaaaactttttgactttta |
525 |
Q |
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| T |
44893131 |
tcataccttgcataataaaataaaaagttaaatatatttttgcttcttataaa-tttttcattttttcgttatagtcatcctaaaactttttgaccttta |
44893229 |
T |
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| Q |
526 |
gtcataaaaagttttctactatcac |
550 |
Q |
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| T |
44893230 |
gtcataaaaagttttctactatcac |
44893254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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