View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858-Insertion-35 (Length: 1170)
Name: NF1858-Insertion-35
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858-Insertion-35 |
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Alignment Details
Target: chr1 (Bit Score: 568; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 322 - 945
Target Start/End: Complemental strand, 45515826 - 45515188
Alignment:
| Q |
322 |
tgtggtctgaaccttactctcatttgaaacataacacagaatcactcgtggttatggtttcttatcatattcttctttttctttgccacttttatcacaa |
421 |
Q |
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| T |
45515826 |
tgtggtctgaaccttattctcatttgaaacataacacagaatcactcgtggttatggtttcttatcatattcttctttttctttgccacttttattacaa |
45515727 |
T |
|
| Q |
422 |
ctgccacataaatctcgtcaacaatatcttcaacccatctgaagtaagcatgtctccaattcttcttgaaccacaaagtgccaataactccccataagcc |
521 |
Q |
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| T |
45515726 |
ctgccacataaatctcgtcaacaatatcttcaacccatctgaagtaagcatgtctccaattcttcttgaaccacaaagtgccaataactccccataagcc |
45515627 |
T |
|
| Q |
522 |
agttgcaaaaccgagcgctatgacgaagtagaaccatactttttctaccccatcttcatcttcatc------accttttgtttgagaagttccatgtgaa |
615 |
Q |
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| T |
45515626 |
agttgcaaaaccgagcgctatgacgaagtagaaccatactttttctaccccatcttcatcttcatcttcatcaccttttgtttgagaagttccatgtgaa |
45515527 |
T |
|
| Q |
616 |
atatgaccaggacacttatttaggagtggagatccacaaaggtatggattgttggcataaatatacgggtcatccaaagttaaaaactgattatctttgg |
715 |
Q |
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| T |
45515526 |
atatgaccaggacacttatttaggagtggagatccacaaaggtatggattgttggcataaatatacgggtcatccaaagttaaaaactgattatctttgg |
45515427 |
T |
|
| Q |
716 |
gaattgatcctgaaaggttattgtacgacaagttcaaatgactcaatgaagttaaagcagacatggtactgggaattgtgcctgaaagttggttatgaga |
815 |
Q |
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| T |
45515426 |
gaattgatcctgaaaggttattgtacgacaagttcaaatgactcaatgaagttaaagcagacatggtactgggaattgtgcctgaaagttggttatgaga |
45515327 |
T |
|
| Q |
816 |
caggtccaaggattctagtgatttcatgcgtcccatcaattgaggaatctctcctttcaaatgatttcttgacaagttcaagccatgc---------agc |
906 |
Q |
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| T |
45515326 |
caggtccaaggattctagtgatttcatgcgtcccatcaattgaggaatctctcctttcaaatgatttcttgacaagttcaagccatgcagtcctgtgagc |
45515227 |
T |
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| Q |
907 |
cctgtgattccatttggaatgaatccaaccaaattgttt |
945 |
Q |
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| T |
45515226 |
catgtgatttcatttggaatgaatccaaccaaattgttt |
45515188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 7 - 258
Target Start/End: Complemental strand, 45516141 - 45515890
Alignment:
| Q |
7 |
atttcttgagacttatttcgacggagattggttacaacaaatctaaaaacataagtttgagtctaatattcaagctatcttaaagattaaatagaaacct |
106 |
Q |
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| T |
45516141 |
atttcttgagacttatttcgacggagattggttacaacaaatctaaaaacataagtttgagtctaatattcaagctatcttaaagattaaatagaaacct |
45516042 |
T |
|
| Q |
107 |
aatattaatgacagtaaactcatgtaacctgtaaaacaattatgtgattttcatctataaaaatacacacttgtgattgtggtttgattgtgacatcgat |
206 |
Q |
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| T |
45516041 |
aatattaatgacagtaaactcatgtaacctgtaaaacaattatgtgattttcatctataaaaatacacacttgtgattgtggtttgattgtgacatcgat |
45515942 |
T |
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| Q |
207 |
gacacaagcgttgaagacaacaaagatgagtttattgactcaaatgatgaag |
258 |
Q |
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| T |
45515941 |
gacacaagcgttgaagacaacaaagatgagtttagtgactcaaatgatgaag |
45515890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 359 - 518
Target Start/End: Complemental strand, 4475125 - 4474969
Alignment:
| Q |
359 |
agaatcactcgtggttatggtttcttatcatattcttctttttctttgccacttttatcacaactgccacataaatctcgtcaacaatatcttcaaccca |
458 |
Q |
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||||||||| || ||||||||||||||||| || |||| |||||||||||||||| |||||| |||||| ||| || ||| ||| |||||| ||||| |
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| T |
4475125 |
agaatcacttgtatttatggtttcttatcat---ctactttatctttgccacttttattacaacttccacatgaatttcatcagcaacatcttccaccca |
4475029 |
T |
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| Q |
459 |
tctgaagtaagcatgtctccaattcttcttgaaccacaaagtgccaataactccccataa |
518 |
Q |
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||| |||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4475028 |
tctaaagtaatcttgtctccaattcttcttgaaccagaaagtgccaataactccccataa |
4474969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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