View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1858-Insertion-37 (Length: 608)

Name: NF1858-Insertion-37
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1858-Insertion-37
NF1858-Insertion-37
[»] chr5 (3 HSPs)
chr5 (167-606)||(34085748-34086181)
chr5 (7-133)||(34085588-34085714)
chr5 (235-271)||(1752801-1752837)
[»] chr7 (1 HSPs)
chr7 (239-279)||(43414221-43414261)
[»] chr1 (3 HSPs)
chr1 (486-606)||(39076944-39077064)
chr1 (247-311)||(39076690-39076754)
chr1 (321-368)||(39076779-39076825)
[»] chr6 (1 HSPs)
chr6 (235-286)||(2317036-2317088)


Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 167 - 606
Target Start/End: Original strand, 34085748 - 34086181
Alignment:
Q  167 tatagaaagagggcataagctcaaaccagaagtcgtatcgacttagagacaatccaaacaatgttatcaatcaataactcttacaaaagaaaatagtctc 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||    
T  34085748 tatagaaagagggcataagctcaaaccagaagtcgtatcgacttagagacaatccaaacaatgttatcaat----aactcttacaaaagaaaatagtctc 34085843  T
Q  267 --tctctttactgttgatttccgattatggtgatagcgtcttccttcaaaaaatttggtttgtctcattctttttgcttaaattgttcttctaatttgtc 364  Q
      ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34085844 tctctctttactgttgatttccgattatggtgataccgtcttccttcaaaaaatttggtttgtctcattctttttgcttaaattgttcttctaatttgtc 34085943  T
Q  365 ttttatagacagtagaagatgtattgtgtccagagatccagaatcctttgtcttctattggtcgatatccgacaggaaattcaannnnnnngtttgtttg 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||| ||||    
T  34085944 ttttatagacagtagaagatgtattgtgtccagagatccagaatcctttgtcttctattggtcgatatccgacaggaaattcaatttttttgtttatttg 34086043  T
Q  465 tggtgggtgttgtcagtggtaaatagtaggtttgtttcaatcttttagggattttgtggattcatcgcagatatcgtcgaagggagggtataattttact 564  Q
    |    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34086044 t----ggtgttgtcagtggtaaatagtaggtttgtttcaatcttttagggattttgtggattcatcgcagttatcgtcgaagggagggtataattttact 34086139  T
Q  565 tgcaatctctattttactcctttggtttgaggactagataag 606  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  34086140 tgcaatctctattttacccctttggtttgaggactagataag 34086181  T

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Target: chr5; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 34085588 - 34085714
Alignment:
Q  7 agtaaggtttgtggttagaagtttttatcgtgatagtgaaggtagagtcgtggaatgtggatagtagttacataaacattgcaccgttgccgtctaaaat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34085588 agtaaggtttgtggttagaagtttttatcgtgatagtgaaggtagagtcgtggaatgtggatagtagttacataaacattgcaccgttgccgtctaaaat 34085687  T
Q  107 taaaatctaaaaggtcgatgtcatcat 133  Q
    |||||||||||||||||||||||||||    
T  34085688 taaaatctaaaaggtcgatgtcatcat 34085714  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 1752837 - 1752801
Alignment:
Q  235 aatcaataactcttacaaaagaaaatagtctctctct 271  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  1752837 aatcaataaatcttacaaaagagaatagtctctctct 1752801  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 43414221 - 43414261
Alignment:
Q  239 aataactcttacaaaagaaaatagtctctctctttactgtt 279  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  43414221 aataactcttacaaaagaaaatagtctctctctttactgtt 43414261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 486 - 606
Target Start/End: Original strand, 39076944 - 39077064
Alignment:
Q  486 aatagtaggtttgtttcaatcttttagggattttgtggattcatcgcagatatcgtcgaagggagggtataattttacttgcaatctctattttactcct 585  Q
    ||||||||||||||||||| ||||||  ||||| |||||||||||||||| ||  || | || || || ||||||||||    ||||||||| ||| |||    
T  39076944 aatagtaggtttgtttcaaacttttaaagatttggtggattcatcgcagaaattttctagggtagtgtgtaattttactcaatatctctattctacccct 39077043  T
Q  586 ttggtttgaggactagataag 606  Q
     || ||||||||||| |||||    
T  39077044 ctgttttgaggactatataag 39077064  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 311
Target Start/End: Original strand, 39076690 - 39076754
Alignment:
Q  247 ttacaaaagaaaatagtctctctctttactgttgatttccgattatggtgatagcgtcttccttc 311  Q
    |||||| ||| |||||||||||||||||||||||| || |  || ||||||||||| ||||||||    
T  39076690 ttacaagagagaatagtctctctctttactgttgaatttcatttttggtgatagcgccttccttc 39076754  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 368
Target Start/End: Original strand, 39076779 - 39076825
Alignment:
Q  321 ggtttgtctcattctttttgcttaaattgttcttctaatttgtctttt 368  Q
    ||||||||||||||||||||||||||  | ||||||||||||||||||    
T  39076779 ggtttgtctcattctttttgcttaaa-gggtcttctaatttgtctttt 39076825  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 286
Target Start/End: Original strand, 2317036 - 2317088
Alignment:
Q  235 aatcaataactcttacaaaagaa-aatagtctctctctttactgttgatttcc 286  Q
    |||||||||||||||||| |||| |||||||||||||||||| ||||| ||||    
T  2317036 aatcaataactcttacaagagaagaatagtctctctctttacggttgaattcc 2317088  T

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