View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1858-Insertion-4 (Length: 711)
Name: NF1858-Insertion-4
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858-Insertion-4 |
 | |
|
| [»] scaffold0432 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 263 - 710
Target Start/End: Complemental strand, 14652196 - 14651741
Alignment:
| Q |
263 |
aatttaatgtgccttagccatgaattttggtctctccatcggattatgtttaatattcacagttcagtctatgctattaacacatcataccaagccgcgc |
362 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
14652196 |
aatttaatgtgccttaaccatgaattttggtctctccatcggattatgtttaatattcacagttcagtctctgctattaacgcatcataccaagccgcgc |
14652097 |
T |
|
| Q |
363 |
ctgtccagttctcataaagaatggttcgctggaacaataccaactactctggtgccgtgttaaatgtggatggcagctgcttgggttctccaattcaagc |
462 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
14652096 |
ctgtccagttctcagaaagaatgattcgctggaacaataccaactacactggtgccgtgttaaatgtggatggcagctgcttgggttctccagttcgagc |
14651997 |
T |
|
| Q |
463 |
cggttacggaggtatattacgtaattcagcaggttttttccttcaaggtttctccggatttatcgaagcaaccacggacatcttgttcgctaaacttacg |
562 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14651996 |
cggttacggaggtatattacgtaactcagcaggctttttccttcaaggtttctccggatttatcgaagcaaccacggacatcttgttcgctgaacttacg |
14651897 |
T |
|
| Q |
563 |
gcaattcacag--------tcatggcaatcgaaaatggaattgaagaaatggtctgctatacagattcgctgctatcagtcaagctgctcactaacagta |
654 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14651896 |
gcaattcacagaggcttactcatggcaatcgaaaatggaattgaagaaatggtctgctatacagattcgctgctatcagtcaagctgctcactaacagta |
14651797 |
T |
|
| Q |
655 |
gctttcgcttccatgcttatgctgttttaattcaagacgttcaagacttgctattc |
710 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14651796 |
gcttccgcttccatgcttatgctgttttaattcaagacattcaagacttgctattc |
14651741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 14106140 - 14106065
Alignment:
| Q |
83 |
aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaat |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14106140 |
aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaat |
14106065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 83 - 158
Target Start/End: Original strand, 44909798 - 44909873
Alignment:
| Q |
83 |
aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaat |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44909798 |
aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaat |
44909873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 43822043 - 43822117
Alignment:
| Q |
83 |
aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43822043 |
aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa |
43822117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 263 - 692
Target Start/End: Original strand, 20286480 - 20286917
Alignment:
| Q |
263 |
aatttaatgtgccttagccatgaattttggtctctccatcggattatgtttaatattcacagttcagtctatgctattaacacatcataccaagccgcgc |
362 |
Q |
| |
|
|||||||||||||||||| |||| | ||||||| ||||||||| ||||| || || |||| ||| ||| ||||||||| | ||||| |||||||| |
|
|
| T |
20286480 |
aatttaatgtgccttagcaatgagtcttggtctacccatcggatcatgttgaacatccacaactcaatctctgctattaatgcttcatatcaagccgcaa |
20286579 |
T |
|
| Q |
363 |
ctgtccagttctcataaagaatggttcgctggaacaataccaactactctggtgccgtgttaaatgtggatggcagctgcttgggttctccaattcaagc |
462 |
Q |
| |
|
| | ||||| |||| ||| ||||||| |||||||||| ||| | |||||||| |||||||||||||||||||||||||||||| ||||||| | ||| |
|
|
| T |
20286580 |
cggcccagtcctcacaaactctggttcgttggaacaatagcaatttctctggtgtcgtgttaaatgtggatggcagctgcttgggagctccaatccgagc |
20286679 |
T |
|
| Q |
463 |
cggttacggaggtatattacgtaattcagcaggttttttccttcaaggtttctccggatttatcgaagcaaccacggacatcttgttcgctaaacttacg |
562 |
Q |
| |
|
||||||||||||||| ||||| || ||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||| |||||||| |
|
|
| T |
20286680 |
cggttacggaggtattttacgaaactcagctggttttttccttcaaggtttctccggttttattgaagcaacaacggacattttgttcgctgaacttacg |
20286779 |
T |
|
| Q |
563 |
gcaattcac--------agtcatggcaatcgaaaatggaattgaagaaatggtctgctatacagattcgctgctatcagtcaagctgctcactaacagta |
654 |
Q |
| |
|
||||||||| | |||||||| |||||||||||||||||| ||| |||| || |||||||||||||| ||||||||||| ||||| ||||||| |
|
|
| T |
20286780 |
gcaattcacaaagggttactcatggcagccgaaaatggaattgaagagatgatctgttacacagattcgctgctttcagtcaagctcctcacaaacagta |
20286879 |
T |
|
| Q |
655 |
gctttcgcttccatgcttatgctgttttaattcaagac |
692 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
20286880 |
gctcccgcttccatgcttatgctgttttaattcaagac |
20286917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 9812207 - 9812007
Alignment:
| Q |
8 |
atttattcatggtttactgtgtgataaaaaagataatcattcaaccataaattaatttctttaaaatgattaaggaatcagagtggcgcagcggaagcgt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9812207 |
atttattcatggtttactgtgtgataaaga-gataatcattcaaccataaattaatttctttaagatgatcaaggaatcagagtggcgcagcggaagcgt |
9812109 |
T |
|
| Q |
108 |
ggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaataaaattacnnnnnnnnnnngccattaaaaaacaatcctctaaattgtta |
207 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
9812108 |
ggtgggcccataacccataggtccctggattaaaaccaggctctgataaataatttta-ttttattttttgccattaaaaaacaatcctctaaattgtta |
9812010 |
T |
|
| Q |
208 |
gtg |
210 |
Q |
| |
|
||| |
|
|
| T |
9812009 |
gtg |
9812007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 10 - 164
Target Start/End: Complemental strand, 9826603 - 9826448
Alignment:
| Q |
10 |
ttattcatggtttactgtgtgataaaaaagataatcattcaacc-ataaattaatttctttaaaatgattaaggaatcagagtggcgcagcggaagcgtg |
108 |
Q |
| |
|
||||||||||| |||| ||||||||| |||||||||||||||| |||||||||||||| |||| ||| ||| |||||||||||||||||||||||||| |
|
|
| T |
9826603 |
ttattcatggtatactttgtgataaaggagataatcattcaacccataaattaatttctctaaattgaacaagaaatcagagtggcgcagcggaagcgtg |
9826504 |
T |
|
| Q |
109 |
gtgggcccataacccacaggtccctggatcgaaaccaggctctgataaataaaatt |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9826503 |
gtgggcccataacccacaggtccctggatcgaaaccaggctctgataaataaaatt |
9826448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 31279352 - 31279278
Alignment:
| Q |
83 |
aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31279352 |
aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa |
31279278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 4449707 - 4449635
Alignment:
| Q |
83 |
aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4449707 |
aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata |
4449635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 10 - 160
Target Start/End: Complemental strand, 9751585 - 9751433
Alignment:
| Q |
10 |
ttattcatggtttactgtgtgataaa--aaagataatcattcaacc-ataaattaatttctttaaaatgattaaggaatcagagtggcgcagcggaagcg |
106 |
Q |
| |
|
||||||||||| |||| ||||||||| | |||||||||||||||| ||||||||| |||| |||| ||| || ||| |||||||||||| ||||||| |
|
|
| T |
9751585 |
ttattcatggtatactttgtgataaaggagagataatcattcaacccataaattaacttctctaaattgaacaataaattagagtggcgcag-ggaagcg |
9751487 |
T |
|
| Q |
107 |
tggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaataa |
160 |
Q |
| |
|
||||||| | ||||| ||||| |||||||||||||| ||| |||| |||||||| |
|
|
| T |
9751486 |
tggtgggtctataactcacagatccctggatcgaaatcagactctaataaataa |
9751433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 182; Significance: 5e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 263 - 709
Target Start/End: Complemental strand, 23131101 - 23130647
Alignment:
| Q |
263 |
aatttaatgtgccttagccatgaattttggtctctccatcggattatgtttaatattcacagttcagtctatgctattaacacatcataccaagccgcgc |
362 |
Q |
| |
|
|||||| ||||||||||| |||| | ||||||| |||||| ||| ||||| || || ||||| ||| ||| ||||||||| | ||||| |||||||| |
|
|
| T |
23131101 |
aatttactgtgccttagcaatgagtcttggtctatccatcagatcatgttgaacatccacagctcaatctctgctattaatgcttcatatcaagccgcaa |
23131002 |
T |
|
| Q |
363 |
ctgtccagttctcataaagaatggttcgctggaacaataccaactactctggtgccgtgttaaatgtggatggcagctgcttgggttctccaattcaagc |
462 |
Q |
| |
|
| | ||||| |||| ||| ||||||| |||||||||| ||| | |||||||| |||||||||||||||||||||||||||||| ||||||| | ||| |
|
|
| T |
23131001 |
cggcccagtcctcacaaacgctggttcgttggaacaatagcaatttctctggtgtcgtgttaaatgtggatggcagctgcttgggagctccaatccgagc |
23130902 |
T |
|
| Q |
463 |
cggttacggaggtatattacgtaattcagcaggttttttccttcaaggtttctccggatttatcgaagcaaccacggacatcttgttcgctaaacttacg |
562 |
Q |
| |
|
||||||| ||||||| ||||| || |||| |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||| |||||||| |
|
|
| T |
23130901 |
cggttacagaggtattttacgaaactcagatggttttttccttcaaggtttctccggttttattgaagcaacaacggacattttgttcgctgaacttacg |
23130802 |
T |
|
| Q |
563 |
gcaattcac--------agtcatggcaatcgaaaatggaattgaagaaatggtctgctatacagattcgctgctatcagtcaagctgctcactaacagta |
654 |
Q |
| |
|
||||||||| | |||||||| |||||||||||||||| | ||| |||| || |||||||| ||||| ||||||||||| ||||| ||||||| |
|
|
| T |
23130801 |
gcaattcacaaagggttactcatggcagccgaaaatggaattgaaaagatgatctgttacacagattcactgctttcagtcaagctcctcacaaacagta |
23130702 |
T |
|
| Q |
655 |
gctttcgcttccatgcttatgctgttttaattcaagacgttcaagacttgctatt |
709 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23130701 |
gctcccgcttccatgcttatgctgttttaattcaagacattcaagacttgctatt |
23130647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 431 - 504
Target Start/End: Complemental strand, 7838497 - 7838424
Alignment:
| Q |
431 |
gatggcagctgcttgggttctccaattcaagccggttacggaggtatattacgtaattcagcaggttttttcct |
504 |
Q |
| |
|
||||| || ||||||||||||||||||| ||| | ||| ||||||||| | ||||||| |||||||| ||||| |
|
|
| T |
7838497 |
gatggtagttgcttgggttctccaattcgagctgattatggaggtataatccgtaattatgcaggtttcttcct |
7838424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 182; Significance: 5e-98; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 263 - 709
Target Start/End: Original strand, 11898779 - 11899233
Alignment:
| Q |
263 |
aatttaatgtgccttagccatgaattttggtctctccatcggattatgtttaatattcacagttcagtctatgctattaacacatcataccaagccgcgc |
362 |
Q |
| |
|
|||||| ||||||||||| |||| | ||||||| ||||||||| ||||| || || |||| ||| ||| ||||||||| | ||||| ||||||| |
|
|
| T |
11898779 |
aatttattgtgccttagcaatgagtcttggtctacccatcggatcatgttgaacatccacatctcaatctctgctattaatgcttcatatcaagccgtaa |
11898878 |
T |
|
| Q |
363 |
ctgtccagttctcataaagaatggttcgctggaacaataccaactactctggtgccgtgttaaatgtggatggcagctgcttgggttctccaattcaagc |
462 |
Q |
| |
|
| | ||||| |||| ||| ||||||| |||||||||| ||| | |||||||| |||||||||||||||||||||||||||||| ||||||| | ||| |
|
|
| T |
11898879 |
cggcccagtcctcacaaactctggttcgttggaacaatagcaatttctctggtgtcgtgttaaatgtggatggcagctgcttgggagctccaatccgagc |
11898978 |
T |
|
| Q |
463 |
cggttacggaggtatattacgtaattcagcaggttttttccttcaaggtttctccggatttatcgaagcaaccacggacatcttgttcgctaaacttacg |
562 |
Q |
| |
|
||||||| ||||||| ||||| || |||| |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||| |||||||| |
|
|
| T |
11898979 |
cggttactgaggtattttacgaaactcagttggttttttccttcaaggtttctccggttttattgaagcaacaacggacattttgttcgctgaacttacg |
11899078 |
T |
|
| Q |
563 |
gcaattcac--------agtcatggcaatcgaaaatggaattgaagaaatggtctgctatacagattcgctgctatcagtcaagctgctcactaacagta |
654 |
Q |
| |
|
||||||||| | |||||||| |||||||||||||||||| ||| |||| || |||||||||||||| ||||||||||| ||||| ||||||| |
|
|
| T |
11899079 |
gcaattcacaaagggttactcatggcagccgaaaatggaattgaagagatgatctgttacacagattcgctgctttcagtcaagctcctcacaaacagta |
11899178 |
T |
|
| Q |
655 |
gctttcgcttccatgcttatgctgttttaattcaagacgttcaagacttgctatt |
709 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11899179 |
gctcccgcttccatgcttatgctgttttaattcaagacattcaagacttgctatt |
11899233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 84 - 158
Target Start/End: Complemental strand, 24835144 - 24835070
Alignment:
| Q |
84 |
atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaat |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24835144 |
atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaat |
24835070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 20204893 - 20204966
Alignment:
| Q |
84 |
atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20204893 |
atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa |
20204966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 16724948 - 16724876
Alignment:
| Q |
83 |
aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16724948 |
aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata |
16724876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 18177818 - 18177746
Alignment:
| Q |
83 |
aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18177818 |
aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata |
18177746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 425 - 697
Target Start/End: Complemental strand, 26431052 - 26430772
Alignment:
| Q |
425 |
aatgtggatggcagctgcttgggttctccaattcaagccggttacggaggtatattacgtaattcagcaggttttttccttcaaggtttctccggattta |
524 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||| ||| ||||| ||||| ||| ||||||||||||| || |||||||||||||| || ||||| |||| |
|
|
| T |
26431052 |
aatgtagatggcagctgcatgggttctccaattcgagctggttatggaggcatactacgtaattcagccgggtttttccttcaaggattttccggcttta |
26430953 |
T |
|
| Q |
525 |
tcgaagcaaccacggacatcttgttcgctaaacttacggcaattcacag--------tcatggcaatcgaaaatggaattgaagaaatggtctgctatac |
616 |
Q |
| |
|
||| ||||| || |||||||||||||| | || | |||||||||| | |||||||||||||| | || ||||| ||||||||||||| |
|
|
| T |
26430952 |
tcgcggcaacaacagacatcttgttcgcagagctaatggcaattcaccgaggcctcctcatggcaatcgaagacggtgttgaaactctggtctgctatac |
26430853 |
T |
|
| Q |
617 |
agattcgctgctatcagtcaagctgctcactaacagtagctttcgcttccatgcttatgctgttttaattcaagacgttca |
697 |
Q |
| |
|
||| || || | |||||||| | ||||||| |||| || || ||||| |||||||| ||||| ||||| |||||| |||| |
|
|
| T |
26430852 |
agactcactccaatcagtcacgttgctcaccaacaatacctcacgctttcatgcttacgctgtattaatccaagacattca |
26430772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 84 - 156
Target Start/End: Original strand, 22261736 - 22261808
Alignment:
| Q |
84 |
atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataa |
156 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22261736 |
atcaaagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctttgataa |
22261808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 84 - 156
Target Start/End: Complemental strand, 22266763 - 22266691
Alignment:
| Q |
84 |
atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataa |
156 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22266763 |
atcaaagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctttgataa |
22266691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 88 - 155
Target Start/End: Complemental strand, 35269919 - 35269852
Alignment:
| Q |
88 |
gagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata |
155 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35269919 |
gagtggcacagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata |
35269852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 263 - 328
Target Start/End: Complemental strand, 26431214 - 26431149
Alignment:
| Q |
263 |
aatttaatgtgccttagccatgaattttggtctctccatcggattatgtttaatattcacagttca |
328 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||| |||| ||||||||||| | || |||||| |
|
|
| T |
26431214 |
aatttaatgtgcctaagcaatgaattttggtctctccctcgggttatgtttaatctacatagttca |
26431149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 5e-55; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 425 - 703
Target Start/End: Original strand, 53321658 - 53321944
Alignment:
| Q |
425 |
aatgtggatggcagctgcttgggttctccaattcaagccggttacggaggtatattacgtaattcagcaggttttttccttcaaggtttctccggattta |
524 |
Q |
| |
|
||||| |||||||||||| ||||||| ||||||| ||| ||||| |||||||||||||||||||||| ||| |||||||||||||| |||||||| |||| |
|
|
| T |
53321658 |
aatgtagatggcagctgcatgggttccccaattcgagctggttatggaggtatattacgtaattcagtagggtttttccttcaaggattctccggcttta |
53321757 |
T |
|
| Q |
525 |
tcgaagcaaccacggacatcttgttcgctaaacttacggcaattcacag--------tcatggcaatcgaaaatggaattgaagaaatggtctgctatac |
616 |
Q |
| |
|
|||| | ||| || |||||||||||||| | |||||| |||||||| | || ||||||||||| |||| ||||||| ||||||||||||| |
|
|
| T |
53321758 |
tcgaggaaacaactgacatcttgttcgcagagcttacgacaattcaccgaggcctgctcgtggcaatcgaagatggtattgaagttctggtctgctatac |
53321857 |
T |
|
| Q |
617 |
agattcgctgctatcagtcaagctgctcactaacagtagctttcgcttccatgcttatgctgttttaattcaagacgttcaagactt |
703 |
Q |
| |
|
||||||||| | |||||| | ||||||||||||||||| || |||| |||||||| |||||| ||||||||||| |||||||||| |
|
|
| T |
53321858 |
agattcgctccaatcagttacgctgctcactaacagtatctcacgctatcatgcttacgctgttctaattcaagacattcaagactt |
53321944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 83 - 165
Target Start/End: Complemental strand, 28745715 - 28745633
Alignment:
| Q |
83 |
aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaataaaatta |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28745715 |
aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataatgaaaatta |
28745633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 39936154 - 39936228
Alignment:
| Q |
83 |
aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39936154 |
aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa |
39936228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 263 - 316
Target Start/End: Original strand, 53321499 - 53321552
Alignment:
| Q |
263 |
aatttaatgtgccttagccatgaattttggtctctccatcggattatgtttaat |
316 |
Q |
| |
|
|||||||||||||| | | |||||||||||||||||| |||||||||||||||| |
|
|
| T |
53321499 |
aatttaatgtgcctaaacaatgaattttggtctctccctcggattatgtttaat |
53321552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 90; Significance: 4e-43; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 5970 - 5769
Alignment:
| Q |
8 |
atttattcatggtttactgtgtgataaaaaagataatcattcaaccataaattaatttctttaaaatgattaaggaatcagagtggcgcagcggaagcgt |
107 |
Q |
| |
|
||||||||||||| |||||| ||||||| |||||||||| |||||||||||||| ||| ||| ||||| ||| |||||||||| |||||||||||||| |
|
|
| T |
5970 |
atttattcatggtgtactgtatgataaaggagataatcatcgaaccataaattaatctctctaacatgatcaagaaatcagagtgacgcagcggaagcgt |
5871 |
T |
|
| Q |
108 |
ggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaataaaattacnnnnnnnnnnngccattaaaaaacaatcctctaaattgtta |
207 |
Q |
| |
|
|||||| |||||||||| |||| ||||||||||||| ||||||| |||||||||||| | ||||||| |||||||||||||||||||||| |
|
|
| T |
5870 |
ggtgggtccataacccataggttcctggatcgaaactaggctctaataaataaaatt-cattttatttttgccattacaaaacaatcctctaaattgtta |
5772 |
T |
|
| Q |
208 |
gtg |
210 |
Q |
| |
|
||| |
|
|
| T |
5771 |
gtg |
5769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 4e-34; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 24977845 - 24977771
Alignment:
| Q |
83 |
aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24977845 |
aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa |
24977771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 24976414 - 24976340
Alignment:
| Q |
83 |
aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24976414 |
aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctttgataaa |
24976340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 84 - 157
Target Start/End: Complemental strand, 12770846 - 12770773
Alignment:
| Q |
84 |
atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12770846 |
atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggattgaaaccaggctctgataaa |
12770773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 84 - 155
Target Start/End: Complemental strand, 12766831 - 12766760
Alignment:
| Q |
84 |
atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata |
155 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12766831 |
atcagagtggcgcagcggaagcatggtgggcccataacccataggtccctggatcgaaaccaggctctgata |
12766760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 3894927 - 3894855
Alignment:
| Q |
83 |
aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |
|
|
| T |
3894927 |
aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccttggatagaaaccagactctgata |
3894855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 12800179 - 12800105
Alignment:
| Q |
83 |
aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa |
157 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
12800179 |
aatcagagtggtgcggcggaagcgtggtgggcccataacctacaggtccctggatcgaaaccaggctctaataaa |
12800105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 12777101 - 12777047
Alignment:
| Q |
84 |
atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatc |
138 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12777101 |
atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatc |
12777047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 40235077 - 40235003
Alignment:
| Q |
83 |
aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40235077 |
aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa |
40235003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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