View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858-Insertion-5 (Length: 666)
Name: NF1858-Insertion-5
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 38 - 374
Target Start/End: Complemental strand, 33251103 - 33250767
Alignment:
| Q |
38 |
gagcagtgctatctgatcccaagaaaagaagtatgtacgatgctggcttgtatgatcctcaagaggaagaagttgaggtaattatgtgcttatggaaaat |
137 |
Q |
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| T |
33251103 |
gagcagtgctatctgatcccaagaaaagaagtatgtacgatgctggcttgtatgatcctcaagaggaagaagttgaggtaattatgtgcttatggaaatt |
33251004 |
T |
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| Q |
138 |
tttcctgtagttttccttgaagattgtttcttttttgtttattagtttgttatattattatggttctgaaaaacatgccttgtttctaattttaggattt |
237 |
Q |
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| T |
33251003 |
tttcctgtagtttttcttgaagattgtttcgtttttgtttattagtttgttatattattatggtgctgaaagacatgcattgtttctaattttaggattt |
33250904 |
T |
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| Q |
238 |
ttctgattttgtggacgaaatggtgtcccttatggctgaagttaggcgagaggtatggttcttttgaccatttcctataactaatcctttagaaaagttt |
337 |
Q |
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| T |
33250903 |
ttctgattttgtggacgaaatggtgtcccttatggctgaagttaggcgagaggtatggttcttttgaccacttcctataactaatcctttagaaaagttt |
33250804 |
T |
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| Q |
338 |
gatcttggtaattatttcatagctccaattttgaatt |
374 |
Q |
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| T |
33250803 |
gatcttggtaattatttcatagctccaattttgaatt |
33250767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 479 - 666
Target Start/End: Complemental strand, 33250688 - 33250501
Alignment:
| Q |
479 |
catgtcacaaaaacattcttgcaggagaaggtttatggtttggaggagttgcaggacatgttcatggaaatggctgaaggattccagagtccttcaatgt |
578 |
Q |
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| T |
33250688 |
catgtcacaaaaacattcttgcaggagaaggtttatggtttggaggagttgcaggacatgttcatggaaatggctgaaggattccagagtccttcagtgt |
33250589 |
T |
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| Q |
579 |
attgtgggacaccatcggtggttgatgaatcctttgctaacagaggaagtgttttgacacgataattgataatataagccggcccata |
666 |
Q |
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| T |
33250588 |
attgtgggacaccatcggtggttgatgaatcctttgctaacagaggaagtgttttgacacgataattgataatataagccgggccata |
33250501 |
T |
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