View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858-Insertion-6 (Length: 637)
Name: NF1858-Insertion-6
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858-Insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 8 - 417
Target Start/End: Original strand, 40236401 - 40236808
Alignment:
| Q |
8 |
ctaatctattcacaccgttaagcacaacaaactattaatggatcgatgcatcaatttttggttgcttgcttaaacaaagagtttaagcaagatatattgt |
107 |
Q |
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|||||||||||||||| |||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40236401 |
ctaatctattcacacctttaagctcaacaaaccattagtggatcgatgcatcaatttttggttgcttgcttaaacaaagagtttaagcaagatatattgt |
40236500 |
T |
|
| Q |
108 |
cgatatagaataattagaactcgtgatattgccacataattaacaatgccactttgaaatcacaatctaaagacaatttcaaaaatactctatctccgag |
207 |
Q |
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| T |
40236501 |
tgatatagaataattagaactcgtgatattgccacataattaacaatgccactttaaaatcacaatctaaagacaacttcaaaaatactctatgtccgag |
40236600 |
T |
|
| Q |
208 |
tgcatatttaattttgctatgataaaaattaattttgaatgaactgatttgtaaaattgattttaactnnnnnnnntagttaaatatgtgttaatttatg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
40236601 |
tgcatatttaattttgctatgataaaaattaattttgaatgaactgatttgtaaaattgattttaatt--aaaaaatagttaaatatgtgttaatttatg |
40236698 |
T |
|
| Q |
308 |
tttgaatacataacaatacattttaacgtaaaaatcacgtttatactctaaagttaaaatcttagctcaattctcaccttcacatgcatcttcaccatga |
407 |
Q |
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| T |
40236699 |
tttgaatacataacaatacattttaacgtaaaaatcacgtttatactttaaagttaaaatcttagctcaattttcaccttcacatgcatcttcaccatga |
40236798 |
T |
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| Q |
408 |
aaaaactaaa |
417 |
Q |
| |
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||||| |||| |
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| T |
40236799 |
aaaaattaaa |
40236808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 288 - 618
Target Start/End: Original strand, 40236931 - 40237252
Alignment:
| Q |
288 |
taaatatgtgttaatttatgtttgaatacataacaatacattttaacgtaaaaatcacgtttatactctaaagttaaaatcttagctcaattctcacctt |
387 |
Q |
| |
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| T |
40236931 |
taaatatgtgttaatttatgtttgaatacataaca-tacattttaacg--------acgtttatactctaaagttaaaatcttagctcaattctcacctt |
40237021 |
T |
|
| Q |
388 |
cacatgcatcttcaccatgaaaaaactaaaactatatgtagtagcttttagtaggcacatttaaaggagatgtcacaacgtttttaaatattggctaaat |
487 |
Q |
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| T |
40237022 |
cacatgcatcttcaccatgaaaaaactaaaactatatgtagtagcttttagtaggcacatttaaaggaaatgtcacaacgtttttaaacattggctaaat |
40237121 |
T |
|
| Q |
488 |
tggaatcaatattgtagccaatagagccacgtgtatctaaatatattaaaatcaatttaacatctttagaatcaattatatcttgctccaaatgtgaatc |
587 |
Q |
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| T |
40237122 |
tggaatcaatattgtagccaacagagccacgtgtatctaaatatattaaaatcaatttaacatcttcaaaatcaattatatcttactctaagcgtgaatc |
40237221 |
T |
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| Q |
588 |
caaatataaatttaacttgtaaaattagtta |
618 |
Q |
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| T |
40237222 |
caaatataaatttaacttataaaattagtta |
40237252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 287 - 417
Target Start/End: Original strand, 40236804 - 40236934
Alignment:
| Q |
287 |
ttaaatatgtgttaatttatgtttgaatacataacaatacattttaacgtaaaaatcacgtttatactctaaagttaaaatcttagctcaattctcacct |
386 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
40236804 |
ttaaatatgtgttaatttatgtttggatacataacaatacatttcaacgtaaaaatcacgtttatactctaaagttaaaatcttagctcaattctcacat |
40236903 |
T |
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| Q |
387 |
tcacatgcatcttcaccatgaaaaaactaaa |
417 |
Q |
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| T |
40236904 |
tcacatgcatcttcaccatgaaaaaactaaa |
40236934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 526 - 563
Target Start/End: Original strand, 34795952 - 34795989
Alignment:
| Q |
526 |
aaatatattaaaatcaatttaacatctttagaatcaat |
563 |
Q |
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| T |
34795952 |
aaatatattaaaatcaattatacatctttagaatcaat |
34795989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 271
Target Start/End: Complemental strand, 48575559 - 48575518
Alignment:
| Q |
231 |
aaaaattaattttgaatgaactga-tttgtaaaattgatttt |
271 |
Q |
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| T |
48575559 |
aaaaattaattttgaatgaattgattttgtaaaattgatttt |
48575518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 11603709 - 11603665
Alignment:
| Q |
206 |
agtgcatatttaattttgctatgataaaaattaattttgaatgaa |
250 |
Q |
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| T |
11603709 |
agtgcatatttgattttacgctgataaaaattaattttgaatgaa |
11603665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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