View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1858-Insertion-8 (Length: 558)
Name: NF1858-Insertion-8
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858-Insertion-8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 19 - 555
Target Start/End: Original strand, 33262782 - 33263315
Alignment:
| Q |
19 |
atataacaccatagacaatgtagacttcannnnnnnnncttcttctcttaaccaattggtcaggaaagtggaaacagctgagaaaagcaagcagcaacaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33262782 |
atataacaccatagacaatgtagacttcattttttttccttcttctcataaccaattggtcaggaaagtggaaacagctgagaaaagcaagcagcaacaa |
33262881 |
T |
|
| Q |
119 |
ggaggtcctgctataagggatggatttactgcaagtcaatgtgataaaggaaaacttcctgcatctccatcaactgggtaattaacttgaagctatatat |
218 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33262882 |
ggagctcctgttataagggatggatttactgcaagtcaatgtgataaaggaaaacttccagcatctccgtcaactgggtaattaacttgaagctatatat |
33262981 |
T |
|
| Q |
219 |
ccatcatttatcttgcattttagactaaataaaagctcaaatccttttcaagatnnnnnnngatgacacacattcatatcttttaaatccaaacattgcc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||| | || |
|
|
| T |
33262982 |
ccatcatttatcttgcattttagactaaatagaggctcaaatccttttcaagagaaaaaaagatgacacacattcatatcttttaaatccaaacaatacc |
33263081 |
T |
|
| Q |
319 |
tccatttcttttgctgtctaattaatgatttaacatacaaatgcatgcaattaacnnnnnnnggttatattcaggccaccccagaagcaacaagtacagg |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33263082 |
tccatttcttttgctgtctaattaatgatttaacatacaaatgcatgcatttaactttttttcgttatattcaggccaccccagaagcaacaagtacagg |
33263181 |
T |
|
| Q |
419 |
ctcctgctgctccaagggacggagttcatgctaatcaacctgataaaggaaaactcccccaatctccatcaacgaggtaattagtgaaaatttaatgttg |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
33263182 |
ctcctgctgctccaagggacggagttcatgctaatcaacctgataaaggaaaactcccccaatctccatcaacgaggtaattagtgaaaattgaa---tg |
33263278 |
T |
|
| Q |
519 |
tttaaacacgttgtgaattgataagtgttaacacatt |
555 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33263279 |
tttaaacacgttgtgaattgataagtagtaacacatt |
33263315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University