View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1858-Insertion-9 (Length: 528)
Name: NF1858-Insertion-9
Description: NF1858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1858-Insertion-9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 8 - 528
Target Start/End: Complemental strand, 43867900 - 43867380
Alignment:
| Q |
8 |
gaaagcatcatctgcagcacaaaaccaacgtgctcttcttcttaaacagctatcacatgctcttgctgtcttggctcccaaggcacctgcatctgcatca |
107 |
Q |
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| T |
43867900 |
gaaagcatcatctgcagcacaaaaccaacgtgctcttcttcttaaacagctatcacatgctcttgctgtcttggctcccaaggcacctgcatctgcatca |
43867801 |
T |
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| Q |
108 |
cctttcatgtctataatcatagaatataactaaactatattgttttatgtcnnnnnnnnnnnnntgattcaattaatggtttgtgtttgttgaaactaga |
207 |
Q |
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| T |
43867800 |
cctttcatgtctataatcatagaatataactaaactatattgttttatgtcaaaaaaa------tgattcaattaatggtttgtgtttgttgaaactaga |
43867707 |
T |
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| Q |
208 |
caatgtgatgaaggagacacactagtgtcagtaggtacnnnnnnnnctt------ctctctgcccatgcacttttggtaatttgctacaggaatattaat |
301 |
Q |
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| T |
43867706 |
caatgtgatgaaggagacacactagtgtcagtaggtactttttttttttttttttctctctgcccatgcacttttggtaatttgctacaggaatattaat |
43867607 |
T |
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| Q |
302 |
ggaggttaatgggacccaccaattggtatgatcttagtgttgattggctagagagttgaagttaatcttattctctgaattctaattggttgtcttttta |
401 |
Q |
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| T |
43867606 |
ggaggttaatgggacccaccaattggtatgatcttagtgttgattggctagagagttgaagttaatcttattctctgaattctaattggttgtcttttta |
43867507 |
T |
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| Q |
402 |
attataggatttcttatggacccattagggtttgtgcattaaatttttgagtaagacatatttgttgtgttacatgtataataattcaataatgtctgct |
501 |
Q |
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| T |
43867506 |
attataggatttcttatggacccattagggtttgtgcattaaatttttgagtaagacatatttgttgtgttacatgtataataattcaataatgtctgct |
43867407 |
T |
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| Q |
502 |
atttgaggtcccctctccttaggttgc |
528 |
Q |
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| T |
43867406 |
atttgaggtcccctctccttaggttgc |
43867380 |
T |
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