View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18580_high_1 (Length: 741)
Name: NF18580_high_1
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_high_1 |
 | |
|
| [»] scaffold0047 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 433; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 17 - 457
Target Start/End: Complemental strand, 39454977 - 39454537
Alignment:
| Q |
17 |
accatttggagtttctttgcagtgacctatgcctggatggatacccacaatgaactgcaaacacttcagagtactcatagcttgccgacttacagttcta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39454977 |
accatttggagtttctttgcagtgacctatgcctggatggatacccacaatgaactgcaaacacttcagagtactcatagcttgccgacttacagttcta |
39454878 |
T |
|
| Q |
117 |
ccacgaatgataacttgaagcttcactattccctttagtgcctgcaatatcttaccaaccggtgaatgtgttataaaagtacttgatgtgtaagaatcat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39454877 |
ccacgaatgataacttgaagcttcactattccctttagtgcctgcaatatcttaccaaccggtgaatgtgttataaaagtacttgatgtgtaagaatcat |
39454778 |
T |
|
| Q |
217 |
gtaatgtctcttcagtttcttattctttggagtaaatttgccaaatttgcatataaaaatttagtttatgttcataaattatcttattattgtgtatttc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39454777 |
gtaatgtctcttcagtttcttattctttggagtaaatttgcgaaatttgcatataaaaatttagtttatgttcataaattatcttattattgtgtatttc |
39454678 |
T |
|
| Q |
317 |
actttcagttagttagtcactaattggttaaatgattcttgtaatttagtcattgcatacattctaattgtcttaggatagtagaaaatttattttgatt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39454677 |
actttcagttagttagtcactaattggttaaatgattcttgtaatttagtcattgcatacattctaattgtcttaggatagtagaaaatttattttgatt |
39454578 |
T |
|
| Q |
417 |
aggttttatgcaagtagggaagaataggtttgtttgaaatg |
457 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
39454577 |
aggttttatgcaagtaaggaagaataggtttgtttgaaatg |
39454537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 540 - 735
Target Start/End: Complemental strand, 39454454 - 39454259
Alignment:
| Q |
540 |
acttgcagttggaggatagagccgaagtgtttcattaatgatcatactgacctgttcaaatatgcaaaccaaaaacaattactaggccaattaactcgat |
639 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39454454 |
acttgcagttggaggatagagccgaagtgtttcattaatgatcatactgacctgttcaaatatgcaaaccaaaaacaattactaggccaattaactcgat |
39454355 |
T |
|
| Q |
640 |
caattgttttgttcgtttattgatgcacagcatatttcatacatactgcactattttttaatctaacaaatcaaatttttatgataattcatctca |
735 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39454354 |
caattgttttgttcgtttattgatgcacagcatatttcatacatactgcactattttttaatctaacaaatcaaatttttatgataattcatctca |
39454259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 57 - 151
Target Start/End: Complemental strand, 47365987 - 47365893
Alignment:
| Q |
57 |
atacccacaatgaactgcaaacacttcagagtactcatagcttgccgacttacagttctaccacgaatgataacttgaagcttcactattccctt |
151 |
Q |
| |
|
|||| ||||||| ||||||||||||| |||||||||||||||||||| ||||||| ||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
47365987 |
atactcacaatggactgcaaacacttaagagtactcatagcttgccgtcttacagctctgccacgaatgatagcttgaagcttcactattccctt |
47365893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 550 - 608
Target Start/End: Original strand, 39449095 - 39449153
Alignment:
| Q |
550 |
ggaggatagagccgaagtgtttcattaatgatcatactgacctgttcaaatatgcaaac |
608 |
Q |
| |
|
||||||||||| ||||| ||||||||||| ||||| |||||||||| |||||| |||| |
|
|
| T |
39449095 |
ggaggatagagtcgaagggtttcattaattatcatgctgacctgttggaatatgtaaac |
39449153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 15774 - 15693
Alignment:
| Q |
70 |
actgcaaacacttcagagtactcatagcttgccgacttacagttctaccacgaatgataacttgaagcttcactattccctt |
151 |
Q |
| |
|
||||||| | |||||| ||| |||||||||| || || || | ||| |||||||||||| ||||||| |||||||||||||| |
|
|
| T |
15774 |
actgcaagctcttcagtgtattcatagcttggcgtctcactgctcttccacgaatgatagcttgaagtttcactattccctt |
15693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University