View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_high_11 (Length: 444)
Name: NF18580_high_11
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 1552842 - 1553270
Alignment:
| Q |
1 |
tcttacttcattaaattggtttttgtttgcatttgcttgtgtttatctacctaaattaacatcaacaatagcaaaagatagaaagagcacagtggagtgg |
100 |
Q |
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| T |
1552842 |
tcttacttcattaaattggtttttgtttgcatttgcttgtgtttatctacctaaattaacatcaacaatagcaaaagatagaaagagcacagtggagtgg |
1552941 |
T |
|
| Q |
101 |
aacatagtgtccacgtggttggaagccaaatcagctgaggatggaaatccatttcctattggtccaaaatctatccacgatataccttaagatttcttgt |
200 |
Q |
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| T |
1552942 |
aacatagtgtccacgtggttggaagccaaatcagctgaggatggaaatccatttcctattggtccaaaatctatccacgatataccttaagatttcttgt |
1553041 |
T |
|
| Q |
201 |
ttagatttcattgtcctacttggccttctatgaaaaccccttcagattctcacacacactcataaaatactctctaactagttcagttcagttcccaagt |
300 |
Q |
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| T |
1553042 |
ttagatttcattgtcctacttggccttctatgaaaaccccttcagattctctcacacactcataaaatactctctaactagttcagttcaattcccaagt |
1553141 |
T |
|
| Q |
301 |
gaactacaaaaccagtctcattactctttatctctagaagacaaatggcagctgcaacatctggtgctgtgttgaatggtttgggatcttccttcttatc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1553142 |
gaactacaaaaccagtctcattactctttatctctagaagacaaatggcagctgcaacatctggtgctgtgttgaatggtttgggatcttccttcttatc |
1553241 |
T |
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| Q |
401 |
tggaggaaagagaagccaaaccttgttag |
429 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
1553242 |
tggaggaaagagaagccaaaccttgttag |
1553270 |
T |
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