View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_high_18 (Length: 408)
Name: NF18580_high_18
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 12 - 395
Target Start/End: Complemental strand, 43018949 - 43018566
Alignment:
| Q |
12 |
atgagaccaaaactcacaccctttacaagaagttgcataatttcttctgacctcacttccaccatactaactctcatatgaaggaaagtatagcgtatga |
111 |
Q |
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| T |
43018949 |
atgagatcaaaactcacaccctttacaagaagttgcataatttcttctgacctctcttccaccatactaactctcatatgaaggaaagtatagcgtatga |
43018850 |
T |
|
| Q |
112 |
cattgcatataactttaagggacgtttgtttaacctctacaaattaaattcctaaaaatctaagttgtaaactctctattggaatgtatatatatatcaa |
211 |
Q |
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| T |
43018849 |
cattgcatataactttaagggacgtttgtttaacctctacaaattaaattcctaaaaatctaagttgtaaactctctattggaatgtatatatatatcaa |
43018750 |
T |
|
| Q |
212 |
ttgtaaactctattcaaccaggctctcataccatatcaagaagtgaagaaaaatgaagaatttttcattaattgaataaagacttttcaaccgatatata |
311 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43018749 |
ttgtaaactatattcaaccaggctctcataccatatcaagaagtgaagaaaaatgaagaatttttcattaattgaataaagacttttcaaccgatatata |
43018650 |
T |
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| Q |
312 |
tacacatttgatattgtactcgtaactaacttacactctagttgtactacattatatgagaaatgttctacattcagagacttg |
395 |
Q |
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| T |
43018649 |
tacacatttgatattgtactcgtaactaacttacactctagttgtactacattatatgagaaatgttctacattcagtgacttg |
43018566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 260 - 343
Target Start/End: Complemental strand, 35057948 - 35057865
Alignment:
| Q |
260 |
aaaaatgaagaatttttcattaattgaataaagacttttcaaccgatatatatacacatttgatattgtactcgtaactaactt |
343 |
Q |
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| T |
35057948 |
aaaagtgaagaatttctcattaattgaatagagagtttgcaactgatatatatatacatttgatcatgtactcttaactaactt |
35057865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 12759965 - 12759899
Alignment:
| Q |
38 |
aagaagttgcataatttcttctgacctcacttccaccatactaactctcatatgaaggaaagtatag |
104 |
Q |
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||||||| ||| |||||||||||||||| | ||||||| |||| ||||||||| ||||||| ||||| |
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| T |
12759965 |
aagaagtcgcacaatttcttctgacctctcatccaccacactagctctcatattaaggaaattatag |
12759899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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