View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18580_high_2 (Length: 703)

Name: NF18580_high_2
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18580_high_2
NF18580_high_2
[»] chr5 (21 HSPs)
chr5 (266-685)||(1052870-1053285)
chr5 (14-164)||(1052199-1052350)
chr5 (266-453)||(1046210-1046397)
chr5 (266-447)||(1065270-1065451)
chr5 (266-447)||(1071009-1071190)
chr5 (354-447)||(1033360-1033453)
chr5 (352-447)||(1043750-1043845)
chr5 (14-64)||(1032876-1032926)
chr5 (278-447)||(1058218-1058387)
chr5 (23-180)||(1045975-1046130)
chr5 (637-685)||(1043979-1044027)
chr5 (5-51)||(1043275-1043321)
chr5 (643-685)||(1065600-1065642)
chr5 (643-685)||(1071327-1071369)
chr5 (386-447)||(1641080-1641141)
chr5 (5-51)||(1049579-1049625)
chr5 (17-51)||(1065046-1065080)
chr5 (14-59)||(1058007-1058052)
chr5 (14-59)||(1070347-1070392)
chr5 (277-361)||(1050993-1051077)
chr5 (643-675)||(1051301-1051333)


Alignment Details
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 266 - 685
Target Start/End: Original strand, 1052870 - 1053285
Alignment:
Q  266 gtttgtcaaccaaatgggcaagcaccaatatcttcaacagacaaactactcacaccacaaattggaggtgatggttttcaaatgccacaattcacacaac 365  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1052870 gtttgtcaaccaaatgggcaagcaccaatatcttcaacaaacaaactactcacaccacaaattggaggtgatggttttcaaatgccacaattcacacaac 1052969  T
Q  366 cgaggaggttaagaacagaagaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaaattcacttttcttaaatt 465  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1052970 cgaggaggctaagaacagaagaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaaattcatttttcttaaatt 1053069  T
Q  466 tctccatagttcaattgattcaatttaaaagtatgaacagaaataatgacgtaaattagagagataaaaattgttacaaaggtacgtatgacatctctaa 565  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||    
T  1053070 tctccatagttcaattgattcaatttaaaagtatgaacagaaataatgacgtaaattagagagataaaaattgttacaaag----gtatgacatctctaa 1053165  T
Q  566 catttttcctactttgaattttactctttagtttaacttactataataggaggacattttacatacttgtatggtgaaaattgtaggttttgatggggtt 665  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1053166 cattttttctactttgaattttactctttagtttaacttactataataggaggacattttacatacttgtatggtgcaaattgtaggttttgatggggtt 1053265  T
Q  666 gaaatccatggagctcatgg 685  Q
    ||||||||||||||||||||    
T  1053266 gaaatccatggagctcatgg 1053285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 1052199 - 1052350
Alignment:
Q  14 ttctgtcagatttggcatgttggaagagtttctaattctagtatgtatttaattttatcaaatgagcaattaata-acatatttttctaatttttcaagt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||    
T  1052199 ttctgtcagatttggcatgttggaagagtttctaattctagtatgtatttaattttatctaatgagcaattaattgacatatttttctaatttttcaagt 1052298  T
Q  113 attacttttaggtgggaatgaaatttttgttagagatgatacttattttata 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1052299 attacttttaggtgggaatgaaatttttgttagagatgatacttattttata 1052350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 266 - 453
Target Start/End: Original strand, 1046210 - 1046397
Alignment:
Q  266 gtttgtcaaccaaatgggcaagcaccaatatcttcaacagacaaactactcacaccacaaattggaggtgatggttttcaaatgccacaattcacacaac 365  Q
    |||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||  ||||| || ||||  |||||||||||| ||    
T  1046210 gtttatcaaccaaatggacaagcaccaatatcttctacagacaaactactcacaccacgaattggaggcaatggtattgaaatatcacaattcacaccac 1046309  T
Q  366 cgaggaggttaagaacagaagaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaaattcac 453  Q
    | |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1046310 caaggaggctaagatcagaagaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaacttcac 1046397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 266 - 447
Target Start/End: Original strand, 1065270 - 1065451
Alignment:
Q  266 gtttgtcaaccaaatgggcaagcaccaatatcttcaacagacaaactactcacaccacaaattggaggtgatggttttcaaatgccacaattcacacaac 365  Q
    |||| ||| |||||||| || ||||||||||| || ||||||||   |||||||||||||||| || || |||||||| | ||  || |||||||||  |    
T  1065270 gtttttcagccaaatggacaggcaccaatatcatctacagacaagtcactcacaccacaaattcgaagtaatggttttaatattgcaaaattcacaccgc 1065369  T
Q  366 cgaggaggttaagaacagaagaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaa 447  Q
    | ||  || |||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1065370 ctagacggctaaggacagatgaaattcctaacattgtcaatgacttcagacttgctgcaagaaatgctattgaagctggtaa 1065451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 266 - 447
Target Start/End: Original strand, 1071009 - 1071190
Alignment:
Q  266 gtttgtcaaccaaatgggcaagcaccaatatcttcaacagacaaactactcacaccacaaattggaggtgatggttttcaaatgccacaattcacacaac 365  Q
    |||| ||| |||||||||||||||||||||||||| |||||||| | ||| | |||||||||| || || ||||| || |  |  || ||||||||| ||    
T  1071009 gtttatcagccaaatgggcaagcaccaatatcttctacagacaagccactaaaaccacaaattcgaagtaatggtattgatgttgcaaaattcacaccac 1071108  T
Q  366 cgaggaggttaagaacagaagaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaa 447  Q
    | ||| || |||| ||||| |||||||| || |||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  1071109 caaggcggctaaggacagatgaaattccaaacattgtcaatgacttcagactcgctgcaagaaatgctattgaagctggtaa 1071190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 354 - 447
Target Start/End: Original strand, 1033360 - 1033453
Alignment:
Q  354 aattcacacaaccgaggaggttaagaacagaagaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaa 447  Q
    ||||| ||| |||||| ||| |||| ||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||    
T  1033360 aattctcaccaccgagaaggctaaggacagatgaaattcctaatattgtaaatgacttcagactcgctgcaagaaatgctattgaagctggtaa 1033453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 352 - 447
Target Start/End: Original strand, 1043750 - 1043845
Alignment:
Q  352 acaattcacacaaccgaggaggttaagaacagaagaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaa 447  Q
    |||||||||  |||||||  || |||| ||||| ||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  1043750 acaattcacgaaaccgagacggctaagcacagatgaaattcctcatattgtcaatgatttcagacttgctgcaagaaatgctattgaagctggtaa 1043845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 1032876 - 1032926
Alignment:
Q  14 ttctgtcagatttggcatgttggaagagtttctaattctagtatgtattta 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1032876 ttctgtcagatttggcatgttggaagagtttctaattctagtatgtattta 1032926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 278 - 447
Target Start/End: Original strand, 1058218 - 1058387
Alignment:
Q  278 aatgggcaagcaccaatatcttcaacagacaaactactcacaccacaaattggaggtgatggttttcaaatgccacaattcacacaaccgaggaggttaa 377  Q
    ||||| || |||||||||||| | |||||||| | ||||||||||||| || || || ||||| || |  |  || |||||||||  || ||  || |||    
T  1058218 aatggacaggcaccaatatctcctacagacaagccactcacaccacaacttcgaagtaatggtattgatgtcgcagaattcacaccgcccagacggctaa 1058317  T
Q  378 gaacagaagaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaa 447  Q
    | | ||| |||||||| ||  ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1058318 ggatagatgaaattccaaaccttgtcaatgacttcagacttgctgcaagaaatgctattgaagctggtaa 1058387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 180
Target Start/End: Original strand, 1045975 - 1046130
Alignment:
Q  23 atttggcatgttggaagagtttctaattctagtatgtatttaattttatcaaatgagcaattaa-taacatatttttctaatttttcaagtattactttt 121  Q
    ||||||| |||||| || |||||||||||| ||||| ||||| ||| ||||||| ||||||||| ||||| |||||| | ||||||| ||||||  ||||    
T  1045975 atttggcttgttggtagggtttctaattctggtatgcatttagtttaatcaaattagcaattaactaacaaattttt-tgatttttc-agtatt-ttttt 1046071  T
Q  122 aggtgggaatgaaatttttgttagag-atgatacttattttatattcactagtttaatta 180  Q
    |||| |||||  ||||||||||| || |||||| ||  ||||| ||||||||||||||||    
T  1046072 aggtaggaattgaatttttgttacagaatgata-ttgatttatgttcactagtttaatta 1046130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 637 - 685
Target Start/End: Original strand, 1043979 - 1044027
Alignment:
Q  637 tggtgaaaattgtaggttttgatggggttgaaatccatggagctcatgg 685  Q
    ||||| |||||| |||||||||||| |||||||||||||||||||||||    
T  1043979 tggtgcaaattgaaggttttgatggagttgaaatccatggagctcatgg 1044027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 1043275 - 1043321
Alignment:
Q  5 ggtagattattctgtcagatttggcatgttggaagagtttctaattc 51  Q
    |||| ||| |||||||||||||||||||||||||||||||| |||||    
T  1043275 ggtatatttttctgtcagatttggcatgttggaagagtttcaaattc 1043321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 643 - 685
Target Start/End: Original strand, 1065600 - 1065642
Alignment:
Q  643 aaattgtaggttttgatggggttgaaatccatggagctcatgg 685  Q
    |||||| ||| ||||||||||||||||||||||||||||||||    
T  1065600 aaattgcaggatttgatggggttgaaatccatggagctcatgg 1065642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 643 - 685
Target Start/End: Original strand, 1071327 - 1071369
Alignment:
Q  643 aaattgtaggttttgatggggttgaaatccatggagctcatgg 685  Q
    |||||| ||| ||||||||||||||||||||||||||||||||    
T  1071327 aaattgcaggatttgatggggttgaaatccatggagctcatgg 1071369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 386 - 447
Target Start/End: Complemental strand, 1641141 - 1641080
Alignment:
Q  386 gaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaa 447  Q
    |||||||||  ||| ||||||||||| |||||||||||||| |||||||| | |||||||||    
T  1641141 gaaattcctcgtatcgtcaatgacttcagacttgctgcaaggaatgctatagcagctggtaa 1641080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 1049579 - 1049625
Alignment:
Q  5 ggtagattattctgtcagatttggcatgttggaagagtttctaattc 51  Q
    |||| ||| |||||||| ||||||||||||||||||||||| |||||    
T  1049579 ggtatatttttctgtcaaatttggcatgttggaagagtttcaaattc 1049625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 1065046 - 1065080
Alignment:
Q  17 tgtcagatttggcatgttggaagagtttctaattc 51  Q
    |||||||||||||||||||||||||||||| ||||    
T  1065046 tgtcagatttggcatgttggaagagtttctgattc 1065080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 1058007 - 1058052
Alignment:
Q  14 ttctgtcagatttggcatgttggaagagtttctaattctagtatgt 59  Q
    ||||||||||||||||| ||||||||||||||| || || ||||||    
T  1058007 ttctgtcagatttggcacgttggaagagtttctgatactggtatgt 1058052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 1070347 - 1070392
Alignment:
Q  14 ttctgtcagatttggcatgttggaagagtttctaattctagtatgt 59  Q
    |||||||| |||||||||||||||||||||||| || || ||||||    
T  1070347 ttctgtcaaatttggcatgttggaagagtttctgatactggtatgt 1070392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 277 - 361
Target Start/End: Original strand, 1050993 - 1051077
Alignment:
Q  277 aaatgggcaagcaccaatatcttcaacagacaaactactcacaccacaaattggaggtgatggttttcaaatgccacaattcaca 361  Q
    |||||| |||| ||||| ||||||  ||  ||| ||||| |||||||||||||||||||||| | || ||||  |||||||||||    
T  1050993 aaatggacaagaaccaacatcttctgcaagcaagctacttacaccacaaattggaggtgatgctgttgaaatatcacaattcaca 1051077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 643 - 675
Target Start/End: Original strand, 1051301 - 1051333
Alignment:
Q  643 aaattgtaggttttgatggggttgaaatccatg 675  Q
    ||||||||||||||||||||||||| |||||||    
T  1051301 aaattgtaggttttgatggggttgagatccatg 1051333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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