View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_high_25 (Length: 364)
Name: NF18580_high_25
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 358
Target Start/End: Original strand, 24562266 - 24562607
Alignment:
| Q |
17 |
acaaataagcacacaattgcacccaaacacgccgtccattaaaatttacagacacatagtagcaaagaaaatggattcaagtacaacagttacaaaacga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24562266 |
acaaataagcacacaattgcacccaaacacgccgtccattaaaatttacagacacatagtagcaaagaaaatggattcaagtacaacagttacaaaacga |
24562365 |
T |
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| Q |
117 |
ccatacacaattgcaaaaacagaaaggaccacataagaaatgacaccgaccatacaaagcgcagccctacacgtcttaataactacccaaggttgctctt |
216 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24562366 |
ccatacacgattgcaaaaacagaaaggaccacataagaaatgacaccgaccatacaaagcgcagccctacacgtcttaataactacccaaggttgctctt |
24562465 |
T |
|
| Q |
217 |
tgctaggcaactctttagatactgattaacttgatacacataattcccatgcacattctcaatgggcttcacaaatctcctatgagtacactgcagtgga |
316 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24562466 |
tgctgggcaactctttagatactgattaacttgatacacgtaattcccatgcacattctcaatgggcttcacaaatctcctatgagtacactgcagtgga |
24562565 |
T |
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| Q |
317 |
aaatgcctcgtgtggaggacagtgttgttttcttcctgatga |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
24562566 |
aaatgcctcgtgtggaggacagtgttgttttcttcctgatga |
24562607 |
T |
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