View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_high_29 (Length: 340)
Name: NF18580_high_29
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_high_29 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 9e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 116 - 324
Target Start/End: Complemental strand, 11227519 - 11227311
Alignment:
| Q |
116 |
gtacaaagttcataaaacttaattgagttgaaaagcacaataaactatgacttatagcttatcagaaaagcacaaaatgttcatataattaaactactct |
215 |
Q |
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| T |
11227519 |
gtacaaagttcataaaccttaattgagttgaaaagaacaataaactatgacttatagcttattagaaaagcacaaaatgttcatataattaaactactct |
11227420 |
T |
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| Q |
216 |
aacatgaaattatcatcttcatcactgtagttattatgatattcatcaagatttggctctggctcatcaggttcttgttcttcttcattgacatttggct |
315 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11227419 |
aacatgaaattagcatcttcatcactacagttattatgatattcatcaagatttggctctggctcatcaggttcttgttcttcttcattgatatttggct |
11227320 |
T |
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| Q |
316 |
cttgttcat |
324 |
Q |
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||||||||| |
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| T |
11227319 |
cttgttcat |
11227311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 238
Target Start/End: Complemental strand, 10128187 - 10128065
Alignment:
| Q |
116 |
gtacaaagttcataaaacttaattgagttgaaaagcacaataaa--ctatgacttatagcttatcagaaaagcacaaaatgttcatataattaaactact |
213 |
Q |
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|||||||||||||||| |||||||||||||| || |||| || ||||| || ||||||||| ||||| |||| ||||||||||||||||||| | |
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| T |
10128187 |
gtacaaagttcataaacattaattgagttgaagagtacaaaaagagctatgtctgatagcttatatgaaaaacacataatgttcatataattaaac--ca |
10128090 |
T |
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| Q |
214 |
ctaacatgaaattatcatcttcatc |
238 |
Q |
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||||||| |||||||||| |||||| |
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| T |
10128089 |
ctaacattaaattatcatgttcatc |
10128065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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