View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_high_40 (Length: 310)
Name: NF18580_high_40
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 13 - 294
Target Start/End: Complemental strand, 43291134 - 43290855
Alignment:
| Q |
13 |
aatattaggtagctaaagt--aatcaatcatcattttgagtgtagattattaccaaaatgatgaaaatagttaggagacataattaagattattaaagat |
110 |
Q |
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| T |
43291134 |
aatattaggtagctaaagtgtaatgaatcatcattttgagtgtagattattaccaaaatgatgaaaatagttaggagacataa----gattattaaagat |
43291039 |
T |
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| Q |
111 |
ctatcaaatcatcaaagtgattgccatgctgacacagtaagcaaaaacctattttgccatcctaaagagatagcccttccatcatctctttctgaaaccc |
210 |
Q |
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| T |
43291038 |
ctatcaaatcatcaaagtgattgccatgctgacacagtaagcaaaaacctattttgccatcctaaagagatagcccttccatcatctctttctgaaaccc |
43290939 |
T |
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| Q |
211 |
tgaaaccaccaccaccttcttcttcaaattgaagtggacaataatgtgttctcatcttaagcaacaattttgcttgtatcaaac |
294 |
Q |
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| T |
43290938 |
tgaaaccaccaccaccttcttcttcaaattgaagtggacaataatgtgttctcatcttaagcaacaattttgcttgtatcaaac |
43290855 |
T |
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