View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18580_high_46 (Length: 294)
Name: NF18580_high_46
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_high_46 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 276
Target Start/End: Original strand, 21264315 - 21264578
Alignment:
| Q |
13 |
gtgagatgaaactattttgtgacaacaaggctgctatagacatttctcacaatccagttcaacatgatcgaaccaaacatgtggaagtagatcggcactt |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21264315 |
gtgaaatgaaactattttgtgacaacaaggctgctataaacatttctcacaatccggttcaacatgatcgaaccaaacatgtggaagtagatcggcactt |
21264414 |
T |
|
| Q |
113 |
tattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcacaaaagccgtatgcagcagaaac |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
21264415 |
tattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcacaaaagccgtatgcagcaaaaac |
21264514 |
T |
|
| Q |
213 |
tttttcaactcacttgacaagttgggcattcagaatctttgtgcaccaacttgagggggagtgt |
276 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
21264515 |
tttttcaactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgt |
21264578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 276
Target Start/End: Original strand, 47804887 - 47805150
Alignment:
| Q |
13 |
gtgagatgaaactattttgtgacaacaaggctgctatagacatttctcacaatccagttcaacatgatcgaaccaaacatgtggaagtagatcggcactt |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47804887 |
gtgaaatgaaactattttgtgacaacaaggctgctataaacatttctcacaatccggttcaacatgatcgaaccaaacatgtggaagtagatcggcactt |
47804986 |
T |
|
| Q |
113 |
tattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcacaaaagccgtatgcagcagaaac |
212 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47804987 |
tattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcacaaaagccgtatgcagcaaaaac |
47805086 |
T |
|
| Q |
213 |
tttttcaactcacttgacaagttgggcattcagaatctttgtgcaccaacttgagggggagtgt |
276 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
47805087 |
tttttcaactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgt |
47805150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 2701228 - 2701166
Alignment:
| Q |
30 |
tgtgacaacaaggctgctatagacatttctcacaatccagttcaacatgatcgaaccaaacat |
92 |
Q |
| |
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|||||||||||||| |||||| ||| |||| |||||||||||||||||||| || |||||| |
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|
| T |
2701228 |
tgtgacaacaaggcagctataagcatagctcataatccagttcaacatgatcgtacaaaacat |
2701166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 52682022 - 52681926
Alignment:
| Q |
19 |
tgaaactattttgtgacaacaaggctgctatagacatttctcacaatccagttcaacatgatcgaaccaaacatgtggaagtagatcggcactttat |
115 |
Q |
| |
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||||| ||| ||||||||||||||| || ||| || |||| ||||||||||||||||||||||| || ||| | ||| | ||||| |||||||| |
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| T |
52682022 |
tgaaattatattgtgacaacaaggccgcaataagtatagctcataatccagttcaacatgatcgaacaaagcatattgaaatcgatcgtcactttat |
52681926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 273
Target Start/End: Original strand, 6847458 - 6847718
Alignment:
| Q |
13 |
gtgagatgaaactattttgtgacaacaaggctgctatagacatttctcacaatccagttcaacatgatcgaaccaaacatgtggaagtagatcggcactt |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
6847458 |
gtgaaatgaaactattttgtgacaacaaggctgctataaacatttctcacaatccggttcaacatgatcgaaccaaacatgtggaagtagatcggcggtt |
6847557 |
T |
|
| Q |
113 |
tattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcacaaaagccgtatgcagcagaaac |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
6847558 |
tattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgagcaccagttagcagatatactcacaaaagccgtatgcagcaaaaac |
6847657 |
T |
|
| Q |
213 |
tttttcaactcacttgacaagttgggcattcagaatctttgtgcaccaacttgagggggag |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
6847658 |
tttttcaactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggag |
6847718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 33720426 - 33720522
Alignment:
| Q |
19 |
tgaaactattttgtgacaacaaggctgctatagacatttctcacaatccagttcaacatgatcgaaccaaacatgtggaagtagatcggcactttat |
115 |
Q |
| |
|
||||| ||| ||||||||||||||| || ||| || |||| ||||||||||||||||||||||| || ||| | ||| | ||||| |||||||| |
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| T |
33720426 |
tgaaattatattgtgacaacaaggccgcaataagtatagctcataatccagttcaacatgatcgaacaaagcatattgaaatcgatcgtcactttat |
33720522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 17 - 276
Target Start/End: Complemental strand, 38460326 - 38460067
Alignment:
| Q |
17 |
gatgaaactattttgtgacaacaaggctgctatagacatttctcacaatccagttcaacatgatcgaaccaaacatgtggaagtagatcggcactttatt |
116 |
Q |
| |
|
|||||| || ||||||||||||||| |||| || || ||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38460326 |
gatgaatctgttttgtgacaacaagtctgcaatcgaaatttcccataatccggttcaacatgatcgaaccaaacatgtggaagtagatcggcactttatt |
38460227 |
T |
|
| Q |
117 |
aaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcacaaaagccgtatgcagcagaaactttt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||| |||||| |||| | |
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| T |
38460226 |
aaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaagatcaattagcagatatactcacaaaagctgtatgtagcagagacttct |
38460127 |
T |
|
| Q |
217 |
tcaactcacttgacaagttgggcattcagaatctttgtgcaccaacttgagggggagtgt |
276 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| | ||||||||||||||||||||||| |
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|
| T |
38460126 |
tcaactcacttgacaagttgggtattcgagatctctatgcaccaacttgagggggagtgt |
38460067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 127
Target Start/End: Complemental strand, 10670677 - 10670611
Alignment:
| Q |
61 |
acaatccagttcaacatgatcgaaccaaacatgtggaagtagatcggcactttattaaacaaaatct |
127 |
Q |
| |
|
|||||||||| ||||||||||| || ||||||||||| |||||||| || ||||| ||| ||||||| |
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| T |
10670677 |
acaatccagtgcaacatgatcgtactaaacatgtggaggtagatcgacattttataaaagaaaatct |
10670611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 138 - 276
Target Start/End: Complemental strand, 18043522 - 18043384
Alignment:
| Q |
138 |
ataattcaatttccatttgttaaatctgaggaccagttagcagatatactcacaaaagccgtatgcagcagaaactttttcaactcacttgacaagttgg |
237 |
Q |
| |
|
|||||||| |||||||||||||||||| | || || ||| |||||||||||||||||| ||||| | |||| |||||| |||||||||||| ||||||| |
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|
| T |
18043522 |
ataattcagtttccatttgttaaatctaaagatcaattatcagatatactcacaaaagttgtatgtaccagagacttttacaactcacttgataagttgg |
18043423 |
T |
|
| Q |
238 |
gcattcagaatctttgtgcaccaacttgagggggagtgt |
276 |
Q |
| |
|
||||||| |||| ||||||||||||||||||| ||||| |
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|
| T |
18043422 |
gcattcaagatctctgtgcaccaacttgaggggaagtgt |
18043384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 276
Target Start/End: Complemental strand, 522755 - 522506
Alignment:
| Q |
27 |
ttttgtgacaacaaggctgctatagacatttctcacaatccagttcaacatgatcgaaccaaacatgtggaagtagatcggcactttattaaacaaaatc |
126 |
Q |
| |
|
|||||||| || |||||||| || | ||||| ||||| ||||| ||||| ||||| || ||||||||||| |||||||| || || || ||| |||||| |
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|
| T |
522755 |
ttttgtgataataaggctgccatcgctatttcccacaacccagtgcaacacgatcgtactaaacatgtggaggtagatcgacatttcatcaaagaaaatc |
522656 |
T |
|
| Q |
127 |
tggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcacaaaagccgtatgcagcagaaactttttcaactcact |
226 |
Q |
| |
|
| || |||| || || |||||| |||||||| ||||| || ||||| ||||| || || ||||| || || | |||| | || || |||||| |
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|
| T |
522655 |
ttgaaggcaaagtagttagatttccttttgttaagtctgaagatcagttggcagacatgcttacaaaggcagtttctagcaaagttttccacagctcact |
522556 |
T |
|
| Q |
227 |
tgacaagttgggcattcagaatctttgtgcaccaacttgagggggagtgt |
276 |
Q |
| |
|
||||||||| |||||| | || | | ||||||||||||||||||||||| |
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|
| T |
522555 |
tgacaagttaggcattaatgatatctatgcaccaacttgagggggagtgt |
522506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 15953 - 16015
Alignment:
| Q |
30 |
tgtgacaacaaggctgctatagacatttctcacaatccagttcaacatgatcgaaccaaacat |
92 |
Q |
| |
|
|||||||||||||| |||||| ||| |||| |||||||||||||||||||| || |||||| |
|
|
| T |
15953 |
tgtgacaacaaggcagctataagcatagctcataatccagttcaacatgatcgtacaaaacat |
16015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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