View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_high_48 (Length: 291)
Name: NF18580_high_48
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_high_48 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 17738968 - 17738689
Alignment:
| Q |
13 |
aatatgatgtttgaaaattttagagaaagatacggtatctaattaacttgtttaatcctgtaaccnnnnnnnn-ctaacttgtttaattgttgttcgctc |
111 |
Q |
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| T |
17738968 |
aatatgatgtttgaaaattttagagaaagatacgatatctaactaacttgtttaatcctgtaacaaaaaaaaaactaacttgtttaattgttgttcgctc |
17738869 |
T |
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| Q |
112 |
aacgtgatcattctcaggtgatttaagatcgcctaaagttaaaacaaattgttcttcactcaacgtgatgattctcaggtgatttaagatcgcttaaagt |
211 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| | |
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| T |
17738868 |
aacgtgatcattctcaggtgatttaagatcacctaaagttagaacaaattgttcttcactcaacgtaatgattctcagatgatttaagatcgcttaaaat |
17738769 |
T |
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| Q |
212 |
tataacaaattgtatgttgtcaacnnnnnnngtttatatttaaaaaataaacatcgtgattaattgtggggtataactat |
291 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17738768 |
tataacaaattgtatgctgtcaactttttctgtttatatttaaaaaataaacatcgtgattaattgtggggtataactat |
17738689 |
T |
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