View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_high_50 (Length: 285)
Name: NF18580_high_50
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_high_50 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 1865014 - 1865289
Alignment:
| Q |
1 |
atgacatggtttaaagacaatatttatgaactttataattctgaaaatttaaaaaagacatttattgttttggaattgaaagcaatgaagttacatgatt |
100 |
Q |
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| T |
1865014 |
atgacatggtttaaagacaatatttatgaactttataattctgaaaatttaaaaaagacatttattgttttggaattgaaagcaatgaagttacatgatt |
1865113 |
T |
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| Q |
101 |
tattattctaagtatgatattcaaagttcaattgtaatctattttgttttccggctct--atgtaa--nnnnnnnatacagtatctgagaatccaacaag |
196 |
Q |
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| T |
1865114 |
tattattctaagtatgatattcaaagttcaattgtaatctattttgttttccggctctaaatgtaatttttttttatacagtatctgagaatccaacaag |
1865213 |
T |
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| Q |
197 |
ctatcatgttgatgtgcaaacttcaaaaggcttgaatctaaaaaatattctacaaggtgtagattcaagtttatct |
272 |
Q |
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| T |
1865214 |
ctatcatgttgatgtgcaaacttcaaaaggcttgaatctaaaaaatattctacatggtgtagattcaagtttatct |
1865289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 133
Target Start/End: Complemental strand, 51575578 - 51575544
Alignment:
| Q |
99 |
tttattattctaagtatgatattcaaagttcaatt |
133 |
Q |
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| T |
51575578 |
tttattattctaagcatgatattcaaagttcaatt |
51575544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 51575492 - 51575447
Alignment:
| Q |
173 |
tacagtatctgagaatccaacaagctatcatgttgatgtgcaaact |
218 |
Q |
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| T |
51575492 |
tacagtaattgagaatccaacatgctattatgttgatgtgcaaact |
51575447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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