View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_high_53 (Length: 282)
Name: NF18580_high_53
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_high_53 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 35 - 282
Target Start/End: Complemental strand, 26493378 - 26493137
Alignment:
| Q |
35 |
tcaccatcattttttcttccatcactattaacatcaccagaactttctccttcaccatcatcctcaccttcaccttcacctttacctgtgatatcacctt |
134 |
Q |
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| T |
26493378 |
tcaccatcattttttcttccatcactattaacatcaccagaactttccccttcaccatcatcctcaccttcaccttcacct------gtgatatcacctt |
26493285 |
T |
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| Q |
135 |
cccctacagttctatctacaccaccacattctagttggatttctgcaccttccccagctccatcttcaaaccaaatgaattcacaaagttcaaacccaaa |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26493284 |
cccctacagttctatctacaccaccacattctagttggatttctgcaccttccccagctccatcttcaaaccaaatgaattcacaaagttcaaacccaaa |
26493185 |
T |
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| Q |
235 |
gcatcattctgttgttatatggtcaacagttggaggcttctcattcct |
282 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26493184 |
gcatcattctgttgttatatggtcaacagttggaggattctcattcct |
26493137 |
T |
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