View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18580_high_56 (Length: 270)

Name: NF18580_high_56
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18580_high_56
NF18580_high_56
[»] chr8 (2 HSPs)
chr8 (1-270)||(36331833-36332102)
chr8 (1-265)||(36324577-36324841)
[»] chr2 (1 HSPs)
chr2 (4-133)||(5459971-5460100)


Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 36332102 - 36331833
Alignment:
Q  1 atatcagctataccaaacacaaagtactgaaaagaaagccaaaatatactcaaaggtaatggttgaactcctggaacagcatcaagcatgttattgtctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36332102 atatcagctataccaaacacaaagtactgaaaagaaagccaaaatatactcaaaggtaatggttgaactcctggaacagcatcaagcatgttattgtctc 36332003  T
Q  101 tagctacattttttcttttcacttctatgattgctgcaattgccatcgagatgcaggatagtattaggccgacacctatgcgctgcaggtgcgtgactcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36332002 tagctacattttttcttttcacttctatgattgctgcaattgccatcgagatgcaggatagtattaggccgacacctatgcgctgcaggtgcgtgactcc 36331903  T
Q  201 ggttggtatgccggtgaatttacgaagaactggcacgcatattcggtcgtagacagggatgataatgact 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36331902 ggttggtatgccggtgaatttacgaagaactggcacgcatattcggtcgtagacagggatgataatgact 36331833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 36324841 - 36324577
Alignment:
Q  1 atatcagctataccaaacacaaagtactgaaaagaaagccaaaatatactcaaaggtaatggttgaactcctggaacagcatcaagcatgttattgtctc 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36324841 atatcagctataccaaatacaaagtactgaaaagaaagccaaaatatactcaaaggtaatggttgaactcctggaacagcatcaagcatgttattatctc 36324742  T
Q  101 tagctacattttttcttttcacttctatgattgctgcaattgccatcgagatgcaggatagtattaggccgacacctatgcgctgcaggtgcgtgactcc 200  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || ||||| ||||||| ||| || |  ||    
T  36324741 tagctacattttttcttttcacttctatgattgccgcgattgccatcgagatgcaggatagtattaggccaacgcctattcgctgcaagtgagtaatgcc 36324642  T
Q  201 ggttggtatgccggtgaatttacgaagaactggcacgcatattcggtcgtagacagggatgataa 265  Q
    |||||||||||| ||||||||||| |||| ||||||||| ||||||||||||| |||||| ||||    
T  36324641 ggttggtatgccagtgaatttacggagaagtggcacgcagattcggtcgtagaaagggattataa 36324577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 5460100 - 5459971
Alignment:
Q  4 tcagctataccaaacacaaagtactgaaaagaaagccaaaatatactcaaaggtaatggttgaactcctggaacagcatcaagcatgttattgtctctag 103  Q
    |||||||| ||||| |  || ||||||||||||||||||||| | || | ||| ||||| |||  | |||| | |||||||||||||||||||||  | |    
T  5460100 tcagctatgccaaatatgaaatactgaaaagaaagccaaaatgtgcttataggcaatggctgatatactggtaaagcatcaagcatgttattgtcattgg 5460001  T
Q  104 ctacattttttcttttcacttctatgattg 133  Q
    | ||  |||||||||| |||||||| ||||    
T  5460000 ccactctttttctttttacttctataattg 5459971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University