View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_high_58 (Length: 267)
Name: NF18580_high_58
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_high_58 |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 267
Target Start/End: Original strand, 41876042 - 41876295
Alignment:
| Q |
13 |
aatatgttatagggaactgtgacttgcttttgctaagcattgctctttgacatgtttttagttgatcttgc-gtggccaaggtaccatatccttggagct |
111 |
Q |
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| T |
41876042 |
aatatgttatagggaactgtgacttgcttttgctaagcattgctctttgacatgttt--agttgatcttgcagtggccaaggtaccatatccttggagct |
41876139 |
T |
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| Q |
112 |
tttggaacaagcccctctgattgatactcttgtagtacctataagtggtttgttctcatttttattttaatccatcaaccaaatgttttaaaattttcat |
211 |
Q |
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| T |
41876140 |
tttggaacaagcccctcagattgatactcttgtagtacctataagtggtttgttctcatttttatgttaatccatcaaccaaatgttttaaaattttcat |
41876239 |
T |
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| Q |
212 |
aaattttagtatcctcttctcgattttccaacaaaatgaaaattgtaggcggtggt |
267 |
Q |
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| T |
41876240 |
aaattttagtattctcttctcgattttccaacaaaatgaaaattgtaggcggtggt |
41876295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 53 - 267
Target Start/End: Complemental strand, 40867984 - 40867771
Alignment:
| Q |
53 |
tgctctttgacatgtttttagttgatcttgc-gtggccaaggtaccatatccttggagcttttggaacaagcccctctgattgatactcttgtagtacct |
151 |
Q |
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| T |
40867984 |
tgctctttgacatgtttgt--ttgatcttgcagtggccagggtaccatatccttggagcttctggaacaagcccctcaactagatacacttgtggtacca |
40867887 |
T |
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| Q |
152 |
ataagtggtttgttctcatttttattttaatccatcaacc-aaatgttttaaaattttcataaattttagtatcctcttctcgattttccaacaaaatga |
250 |
Q |
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| T |
40867886 |
ataagtggtttgtttgctttttgatgtcaaaccatcatccaaaatgtttcaaaatttgcattgattttggtatccccttcttgattttccaac-aaatga |
40867788 |
T |
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| Q |
251 |
aaattgtaggcggtggt |
267 |
Q |
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| T |
40867787 |
aaactgcaggaggtggt |
40867771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 52 - 263
Target Start/End: Complemental strand, 24817771 - 24817556
Alignment:
| Q |
52 |
ttgctctttgacatgtttt-tagttgatcttgc-gtggccaaggtaccatatccttggagcttttggaacaagcccctctgattgatactcttgtagtac |
149 |
Q |
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| T |
24817771 |
ttgctctttgacatgtttgctggttgatcttatagtggccaaggtaccatatccttggagtttcttgaacaaatccctcaaatcgatacacttgtagtac |
24817672 |
T |
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| Q |
150 |
ctataagtggtttgt--tctcatttttattttaatccatcaaccaaatgttttaaaattttcataaattttagtatcctcttctcgattttccaacaaaa |
247 |
Q |
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| T |
24817671 |
caataagtggtttgttctctcttttttacgtcaatccatcatcaaaatgtttcacaatttgcatataatttagtatcctcttatcgattttgttacaaaa |
24817572 |
T |
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| Q |
248 |
tgaaaattgtaggcgg |
263 |
Q |
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| T |
24817571 |
tgatacttgcaggcgg |
24817556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 238
Target Start/End: Complemental strand, 24800695 - 24800505
Alignment:
| Q |
52 |
ttgctctttgacatgtttt-tagttgatcttgc-gtggccaaggtaccatatccttggagcttttggaacaagcccctctgattgatactcttgtagtac |
149 |
Q |
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| T |
24800695 |
ttgctctttgacatgtttgctggttgatcttatagtggccaaggtaccatatccttggagtttcttgaacaaatccctcaaatcgatacacttgtagtac |
24800596 |
T |
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| Q |
150 |
ctataagtggtttgt--tctcatttttattttaatccatcaaccaaatgttttaaaattttcataaattttagtatcctcttctcgatttt |
238 |
Q |
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| T |
24800595 |
caataagtggtttgttctctcttttttacgtcaatccatcatcaaaatgtttcacaatttgcatataatttagtatcctcttatcgatttt |
24800505 |
T |
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