View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_high_59 (Length: 265)
Name: NF18580_high_59
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_high_59 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 15971276 - 15971532
Alignment:
| Q |
1 |
tgtcgatccaatgacatcggatatgcatgccaactatgtggatgcgagcttttccccaatgtaggcaatgtcaatatgagcaaataaaagtcacaacatt |
100 |
Q |
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| T |
15971276 |
tgtcaatccaatgacatcagatatgcacgccaactatgtggctgcgagcttttccccaacgtaggcaatatcaatatgtgcaaataaaagtcacaacatt |
15971375 |
T |
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| Q |
101 |
aacaaccgcagctgcgtcgcggtttttaatattgtggagatcaattgtagtcaaatgctcatttnnnnnnnncattgtagtcaaatgcaattcatgtgct |
200 |
Q |
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|||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
15971376 |
aacaaccgtaactgcgtcgtggtttttaatattgtggagatcaattgtagtcaaatgctcatttaagaaaaacattgtagtcaaatgcaattcatgtgct |
15971475 |
T |
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| Q |
201 |
agctccagtcgcgactacatcttgtggttgcagcgaaataaaaaaccatgatgatgt |
257 |
Q |
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|| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15971476 |
agttcctgtcgcaactacatcttgtggttgcagcgaaataaaaaaccatgatgatgt |
15971532 |
T |
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