View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_high_6 (Length: 528)
Name: NF18580_high_6
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 10 - 426
Target Start/End: Complemental strand, 27507024 - 27506603
Alignment:
| Q |
10 |
ataattctcaatcctcttttcacgtcttttctattcaaccccacaccattctagcactcccaatgggtaatcaaatttgagggagtaataa---acacct |
106 |
Q |
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| T |
27507024 |
ataattctcaatcctcttttcacttcttttctattcaaccccacaccattccagcactcccaatgggtaaacagatttgagggagtaataacagacacct |
27506925 |
T |
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| Q |
107 |
ctaaccattcttgaacattttgcccaattttcgaagtctcattgcaatgcaaaaataagtggtttgtag-ctcattctgctcattacataaaaaacacct |
205 |
Q |
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| T |
27506924 |
ctaaccattcttgaacatattgccaaattttccaagtctcattgcaatgcaaaaataagtggtttgtagactcattctgctcattacataaaaagcacct |
27506825 |
T |
|
| Q |
206 |
caaattggcagtcaacgggataactttccttctcagcaaattaactctagccgggattcggtttatcaacaccttccacgagagcgccaccgcttttgaa |
305 |
Q |
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| T |
27506824 |
caagttggcagtcaacgggataactttccttctcagcaaattaactctagccaagattcggttaatcaacaccttccacgagagattcgccgcttttgaa |
27506725 |
T |
|
| Q |
306 |
ggtgtggtactcttccatatttgacttagaacccgcttttgctcctctcacatcctgtttgctagattcacgcccccctctagtttcttgtaaattg-ac |
404 |
Q |
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| T |
27506724 |
ggtgtggtactcttccatatttgactttgaacctgcttttgctcctctcacatcctgtttgcaagattcacgcccccctctagtttcttgtaaattgaac |
27506625 |
T |
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| Q |
405 |
taactgtgaaaacccctccctc |
426 |
Q |
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| T |
27506624 |
taactgtgaaaacccctccctc |
27506603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 429 - 483
Target Start/End: Complemental strand, 27493726 - 27493672
Alignment:
| Q |
429 |
agaagaaaataaggaagcctcaaagcagaagcagcagataaacgctttcttcttt |
483 |
Q |
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| T |
27493726 |
agaagaaaataaggatgcctcaaagcagaagcagcagataaacgccttcttcttt |
27493672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 429 - 483
Target Start/End: Complemental strand, 27500384 - 27500330
Alignment:
| Q |
429 |
agaagaaaataaggaagcctcaaagcagaagcagcagataaacgctttcttcttt |
483 |
Q |
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| T |
27500384 |
agaagaaaataaggatgcctcaaagcagaagcagcagataaacgccttcttcttt |
27500330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 429 - 483
Target Start/End: Complemental strand, 27515176 - 27515122
Alignment:
| Q |
429 |
agaagaaaataaggaagcctcaaagcagaagcagcagataaacgctttcttcttt |
483 |
Q |
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| T |
27515176 |
agaagaaaataaggatgcctcaaagcagaagcagcagataaacgccttcttcttt |
27515122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 430 - 511
Target Start/End: Complemental strand, 27517700 - 27517619
Alignment:
| Q |
430 |
gaagaaaataaggaagcctcaaagcagaagcagcagataaacgctttcttcttttggagataagctttgatgcaaagtccca |
511 |
Q |
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||||||||||| || ||||||||||||||||| | |||||| | |||||| ||| || ||||||||||| | | |||||||| |
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| T |
27517700 |
gaagaaaataaagatgcctcaaagcagaagcaacggataaatgttttcttatttcggtgataagctttgcttctaagtccca |
27517619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 423 - 472
Target Start/End: Original strand, 292979 - 293028
Alignment:
| Q |
423 |
cctcctagaagaaaataaggaagcctcaaagcagaagcagcagataaacg |
472 |
Q |
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| T |
292979 |
cctcctagaagaaaataaggatgtctcaaagctgaagcagcagataaacg |
293028 |
T |
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