View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_high_60 (Length: 264)
Name: NF18580_high_60
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_high_60 |
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| [»] chr7 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 63 - 264
Target Start/End: Complemental strand, 41031036 - 41030836
Alignment:
| Q |
63 |
ctgaaaatgtgtgtgtatactttttctcaatatgaaaatgatgacaaattgataattgcagatgcataatcatggacctctgctttcctgataaacatgt |
162 |
Q |
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| T |
41031036 |
ctgaaaatgtgtgtgtatactttttctcaatatgaaaatgatgacaaattgataattgcagatgcataatcatggac-tctgctttcctgataagcatgt |
41030938 |
T |
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| Q |
163 |
tataaattcaaatggtatgaaacttaccacgtcatcttgttcaagcactcgtagagctctctttttagatgtatctgcatttgatgtggtccctttggta |
262 |
Q |
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| T |
41030937 |
tataaattcaaatggtatgaaacttaccacatcatcttgttcaagcactcgtagagctctctttttagatgtatctgcatttgatgtggtccctttggta |
41030838 |
T |
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| Q |
263 |
ga |
264 |
Q |
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| T |
41030837 |
ga |
41030836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 109 - 264
Target Start/End: Complemental strand, 42607422 - 42607267
Alignment:
| Q |
109 |
aattgataattgcagatgcataatcatggacctctgctttcctgataaacatgttataaattcaaatggtatgaaacttaccacgtcatcttgttcaagc |
208 |
Q |
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||||||| ||||||||| ||||||| |||| || ||| ||||| ||| ||||||||||| |||||| ||| |||| ||||| | || |||||||||| |
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| T |
42607422 |
aattgatgattgcagatacataatcttggatctgtgccttccttgtaagcatgttataaaatcaaattgtactgaactcaccacattattttgttcaagc |
42607323 |
T |
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| Q |
209 |
actcgtagagctctctttttagatgtatctgcatttgatgtggtccctttggtaga |
264 |
Q |
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| T |
42607322 |
acttctagagctctctttttagatgaatctgcatttgatgtggtcccttgggtaga |
42607267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 117
Target Start/End: Complemental strand, 42607624 - 42607591
Alignment:
| Q |
84 |
ttttctcaatatgaaaatgatgacaaattgataa |
117 |
Q |
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| T |
42607624 |
ttttctcaatatgagaatgatgacaaattgataa |
42607591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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