View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18580_high_64 (Length: 261)
Name: NF18580_high_64
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_high_64 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 20531958 - 20531715
Alignment:
| Q |
1 |
gatgtatgagttggagaaaaagcttcatgaagacattgatgatgaagaagaatggtcactagttgtttctgggattatgaacaccaacaacgaatggtca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20531958 |
gatgtatgagttggagaaaaagcttcatgaagacattgatgatgaagaagaatggtcactagttgtttctgggattatgaacaccaacaacgaatggtca |
20531859 |
T |
|
| Q |
101 |
gaaacaattcgtaatttgaatagttttgagcacaatcctatccaaaaacctatttcattctcacctcctttttccaccacgtcactaaattcatctcctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20531858 |
gaaacaattcgtaatttgaatagttttgagcacaatcctatccaaaaacctatttcattctcacctcctttttccaccacgtcactaaattcatctcctt |
20531759 |
T |
|
| Q |
201 |
catctattgtttcaccagcttctgaattttccaaacaatcatta |
244 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
20531758 |
catctattgtttcaccagcttctgagttttccaaacaatcatta |
20531715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 80 - 239
Target Start/End: Complemental strand, 28297231 - 28297072
Alignment:
| Q |
80 |
aacaccaacaacgaatggtcagaaacaattcgtaatttgaatagttttgagcacaatcctatccaaaaacctatttcattctcacctcctttttccacca |
179 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||||||| ||||| ||||||||||| |||||| ||||||| |||||| | |||| ||| |
|
|
| T |
28297231 |
aacaccaacaacgaatggttagaaacaatccgtaatttgaatagtttcgagcaaaatcctatccagaaacctgtttcattttcacctacctttttagcca |
28297132 |
T |
|
| Q |
180 |
cgtcactaaattcatctccttcatctattgtttcaccagcttctgaattttccaaacaat |
239 |
Q |
| |
|
| | ||| |||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
28297131 |
cattgctatattcatctccttcatctattgtttcacctgcttctgagttttccaaacaat |
28297072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 81 - 240
Target Start/End: Original strand, 28295530 - 28295689
Alignment:
| Q |
81 |
acaccaacaacgaatggtcagaaacaattcgtaatttgaatagttttgagcacaatcctatccaaaaacctatttcattctcacctcctttttccaccac |
180 |
Q |
| |
|
||||||| || ||||||||| ||||||| ||||||||||||| ||||||| | || |||||||| |||||| |||||| ||||| | |||||| | || |
|
|
| T |
28295530 |
acaccaataaagaatggtcaaaaacaatccgtaatttgaataattttgagaaaaaccctatccataaacctgtttcatcctcacatactttttatgcaac |
28295629 |
T |
|
| Q |
181 |
gtcactaaattcatctccttcatctattgtttcaccagcttctgaattttccaaacaatc |
240 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |||| ||| |||||||||||||| |
|
|
| T |
28295630 |
atcgctaaattcatctccttcatctattgtttcacctgcttatgagttttccaaacaatc |
28295689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University