View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18580_high_67 (Length: 252)

Name: NF18580_high_67
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18580_high_67
NF18580_high_67
[»] chr2 (2 HSPs)
chr2 (17-234)||(37489156-37489378)
chr2 (58-110)||(15915585-15915637)
[»] chr5 (1 HSPs)
chr5 (58-214)||(32716725-32716881)
[»] chr7 (2 HSPs)
chr7 (58-177)||(33781623-33781742)
chr7 (49-104)||(30401451-30401506)
[»] chr1 (2 HSPs)
chr1 (58-166)||(35996164-35996272)
chr1 (68-164)||(25446992-25447088)
[»] chr4 (2 HSPs)
chr4 (49-146)||(13921848-13921945)
chr4 (49-129)||(13922519-13922599)
[»] chr3 (2 HSPs)
chr3 (65-129)||(50362907-50362971)
chr3 (122-165)||(10703382-10703425)
[»] scaffold2136 (1 HSPs)
scaffold2136 (58-146)||(595-683)
[»] chr8 (3 HSPs)
chr8 (49-131)||(19475119-19475201)
chr8 (49-131)||(19546044-19546126)
chr8 (49-131)||(19586570-19586652)
[»] chr6 (2 HSPs)
chr6 (49-143)||(15882165-15882259)
chr6 (68-129)||(15882826-15882887)


Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 37489156 - 37489378
Alignment:
Q  17 aatatacattaaaagg-----agtcagatactttgtaaccagatgcaagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggc 111  Q
    ||||||||||||||||     |||||||| |||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37489156 aatatacattaaaaggttaaaagtcagatcctttgtaaccaagtgcaagtctaataacttacaccaaatcttaagcattaaattaacttaatccaatggc 37489255  T
Q  112 ttccatctatcaaattaaaaggaatcaaaagtgagacgcatacaattccctctcccttctcttgtcccaacatttgcttgaagtcattctttctaaattg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37489256 ttccatctatcaaattaaaaggaatcaaaagtgagacgcatacaattccctctcccttctcttgtcccaacatttgcttgaagtcattctttctaaattg 37489355  T
Q  212 ctttcgatttcaatgcttatatt 234  Q
    |||||||||||||||| ||||||    
T  37489356 ctttcgatttcaatgcgtatatt 37489378  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 15915585 - 15915637
Alignment:
Q  58 aagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatgg 110  Q
    ||||||||||||||||| ||||| |||| | ||||||||| |||||| |||||    
T  15915585 aagtctaataacttacatcaaattttaatcgttaaattaaattaatctaatgg 15915637  T

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Target: chr5 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 58 - 214
Target Start/End: Complemental strand, 32716881 - 32716725
Alignment:
Q  58 aagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaaggaatcaaaagtgagacgcatacaat 157  Q
    |||| |||| |||||||||||||||||| | | |||||||||||||||||||||||||||  |||||||||||||||||| || ||||||| | ||||||    
T  32716881 aagtataatgacttacaccaaatcttaaccgtaaaattaacttaatccaatggcttccataaatcaaattaaaaggaatctaatgtgagacacgtacaat 32716782  T
Q  158 tccctctcccttctcttgtcccaacatttgcttgaagtcattctttctaaattgctt 214  Q
    ||||| || ||| |||||||||||| | |||||||| ||||||||||||||||||||    
T  32716781 tccctttctcttttcttgtcccaacgtctgcttgaaatcattctttctaaattgctt 32716725  T

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Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 58 - 177
Target Start/End: Original strand, 33781623 - 33781742
Alignment:
Q  58 aagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaaggaatcaaaagtgagacgcatacaat 157  Q
    ||||||||| |||||||||||||||||  | | || || |||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||| ||    
T  33781623 aagtctaatgacttacaccaaatcttatccgtcaattttacttaatccaatggcttccatctatcaaattaaaagaagtcaaaagtgagacacatacgat 33781722  T
Q  158 tccctctcccttctcttgtc 177  Q
    ||||||||||||||||||||    
T  33781723 tccctctcccttctcttgtc 33781742  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 30401506 - 30401451
Alignment:
Q  49 accagatgcaagtctaataacttacaccaaatcttaaacattaaattaacttaatc 104  Q
    |||||||||||||||||||| ||||||||||||| || ||||||| ||| ||||||    
T  30401506 accagatgcaagtctaataaattacaccaaatctcaaccattaaactaaattaatc 30401451  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 58 - 166
Target Start/End: Original strand, 35996164 - 35996272
Alignment:
Q  58 aagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaaggaatcaaaagtgagacgcatacaat 157  Q
    |||||||| ||| ||||||||||||||  |||||||||||  |||||||| | |||  || |  ||||||||||||||||||||||||||| ||| ||||    
T  35996164 aagtctaacaacctacaccaaatcttagccattaaattaaactaatccaacgacttatatttgacaaattaaaaggaatcaaaagtgagacacatgcaat 35996263  T
Q  158 tccctctcc 166  Q
    |||||||||    
T  35996264 tccctctcc 35996272  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 164
Target Start/End: Complemental strand, 25447088 - 25446992
Alignment:
Q  68 acttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaaggaatcaaaagtgagacgcatacaattccctct 164  Q
    ||||||||||||||| || || |||||||| |||||| ||||||| | || |||||||||||||   ||| |||||||||| ||||||||| |||||    
T  25447088 acttacaccaaatctcaaccactaaattaaattaatctaatggctcctatttatcaaattaaaaaacatctaaagtgagacacatacaatttcctct 25446992  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 146
Target Start/End: Original strand, 13921848 - 13921945
Alignment:
Q  49 accagatgcaagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaaggaatcaaaagtgag 146  Q
    |||||||| ||||||||| || |||||||||||| || |||||| |||| |||||| |||||||  ||| | |||||||||| | || ||||||||||    
T  13921848 accagatgtaagtctaatgacatacaccaaatctcaaccattaatttaaattaatctaatggctctcatatgtcaaattaaaggaaaccaaaagtgag 13921945  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 13922599 - 13922519
Alignment:
Q  49 accagatgcaagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaa 129  Q
    |||||||  ||||||||| ||||||||||||||| || |||||| |||| |||||| |||||||  ||| |||||||||||    
T  13922599 accagatctaagtctaatgacttacaccaaatctcaaccattaatttaaattaatctaatggctctcatatatcaaattaa 13922519  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 50362971 - 50362907
Alignment:
Q  65 ataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaa 129  Q
    |||||||| ||||||||| || ||||||||||| ||||| ||||||||| ||| |||||||||||    
T  50362971 ataacttataccaaatctcaaccattaaattaaattaattcaatggctttcatatatcaaattaa 50362907  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 10703425 - 10703382
Alignment:
Q  122 caaattaaaaggaatcaaaagtgagacgcatacaattccctctc 165  Q
    ||||||||||| ||||||||| ||||| ||||||||||||||||    
T  10703425 caaattaaaagaaatcaaaagcgagacacatacaattccctctc 10703382  T

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Target: scaffold2136 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold2136
Description:

Target: scaffold2136; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 146
Target Start/End: Complemental strand, 683 - 595
Alignment:
Q  58 aagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaaggaatcaaaagtgag 146  Q
    ||||||||||||||||||||||||||||   ||||||||| |||||| ||| | | || |  ||||||||||| | || ||||||||||    
T  683 aagtctaataacttacaccaaatcttaactgttaaattaaattaatctaatagatcccctacatcaaattaaaggaaaccaaaagtgag 595  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 131
Target Start/End: Complemental strand, 19475201 - 19475119
Alignment:
Q  49 accagatgcaagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaa 131  Q
    ||||| || ||||||||| |||| |||||||||| |  | ||||||||| |||||  ||||||||||||||  ||||||||||    
T  19475201 accaggtgtaagtctaatgacttgcaccaaatctcagccgttaaattaaattaatgtaatggcttccatcttccaaattaaaa 19475119  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 131
Target Start/End: Complemental strand, 19546126 - 19546044
Alignment:
Q  49 accagatgcaagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaa 131  Q
    ||||| || ||||||||| |||| |||||||||| |  | ||||||||| |||||  ||||||||||||||  ||||||||||    
T  19546126 accaggtgtaagtctaatgacttgcaccaaatctcagccgttaaattaaattaatgtaatggcttccatcttccaaattaaaa 19546044  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 131
Target Start/End: Original strand, 19586570 - 19586652
Alignment:
Q  49 accagatgcaagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaa 131  Q
    ||||| || ||||||||| |||| |||||||||| |  | ||||||||| |||||  ||||||||||||||  ||||||||||    
T  19586570 accaggtgtaagtctaatgacttgcaccaaatctcagccgttaaattaaattaatgtaatggcttccatcttccaaattaaaa 19586652  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 143
Target Start/End: Original strand, 15882165 - 15882259
Alignment:
Q  49 accagatgcaagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaaggaatcaaaagt 143  Q
    ||||| || ||||||||| || |||||||||||| || |||||| |||| |||||| |||||||  ||| | ||||||||||   ||||||||||    
T  15882165 accaggtgtaagtctaatgacatacaccaaatctcaaccattaatttaaattaatctaatggctctcatatgtcaaattaaagaaaatcaaaagt 15882259  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 15882887 - 15882826
Alignment:
Q  68 acttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaa 129  Q
    ||||||||||||||| || |||||| |||| |||||| |||||||  ||| |||||||||||    
T  15882887 acttacaccaaatctcaaccattaatttaaattaatctaatggctctcatatatcaaattaa 15882826  T

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