View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18580_high_75 (Length: 240)
Name: NF18580_high_75
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_high_75 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 36331618 - 36331839
Alignment:
| Q |
19 |
ccaaatccatggaaactatgcagagttacacaagtagaaaatgccaaaataatcctaagcatgattccaatattctgctgcacaatcataatgactcttt |
118 |
Q |
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| T |
36331618 |
ccaaatccatggaaactatgcagagttacacaagtagaaaatgccaaaataatcctaagcatgattccaatattctgttgcacaatcataatgactcttt |
36331717 |
T |
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| Q |
119 |
gcttagcacagcttcaaaccttctcagtccagcaaggcttcacaatggacacaagaattaccaaacatttcaacatcccaccaccatccttgccaatcat |
218 |
Q |
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| T |
36331718 |
gcttagcacagcttcaaaccttctcagtccaacaaggcttcacaatggacacaagaatcaccaaacatttcaacatcccaccaccatccttgccaatcat |
36331817 |
T |
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| Q |
219 |
cccaattggtttcttagtcatt |
240 |
Q |
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|||||||||||||||||||||| |
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| T |
36331818 |
cccaattggtttcttagtcatt |
36331839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 25 - 234
Target Start/End: Original strand, 36324363 - 36324572
Alignment:
| Q |
25 |
ccatggaaactatgcagagttacacaagtagaaaatgccaaaataatcctaagcatgattccaatattctgctgcacaatcataatgactctttgcttag |
124 |
Q |
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| T |
36324363 |
ccatggaaactatgcagagttacacaagtagaaaatgccaaaatatttctaagcatgatcccagtattcttctgtacaatcataatgactctttgcttag |
36324462 |
T |
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| Q |
125 |
cacagcttcaaaccttctcagtccagcaaggcttcacaatggacacaagaattaccaaacatttcaacatcccaccaccatccttgccaatcatcccaat |
224 |
Q |
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| T |
36324463 |
cacagcttcaaaccttttcagtccaacaaggcttcacaatggacacaagaatcaccaaacatttcaacatcccaccagcatccttaccaatcatcccagt |
36324562 |
T |
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| Q |
225 |
tggtttctta |
234 |
Q |
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|| ||||||| |
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| T |
36324563 |
tgttttctta |
36324572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 24 - 224
Target Start/End: Original strand, 5459624 - 5459824
Alignment:
| Q |
24 |
tccatggaaactatgcagagttacacaagtagaaaatgccaaaataatcctaagcatgattccaatattctgctgcacaatcataatgactctttgctta |
123 |
Q |
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|||||||||||| ||||| |||||||||||||||||||||||||| | || |||||| ||||||||||||| || ||||| |||||||| |||||| || |
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| T |
5459624 |
tccatggaaactttgcagggttacacaagtagaaaatgccaaaatccttctcagcatggttccaatattctgttgtacaattataatgaccctttgccta |
5459723 |
T |
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| Q |
124 |
gcacagcttcaaaccttctcagtccagcaaggcttcacaatggacacaagaattaccaaacatttcaacatcccaccaccatccttgccaatcatcccaa |
223 |
Q |
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| T |
5459724 |
gctcaactccaaaccttttcaatcgaacaaggctacaccatggacacaaaagtcaccaaacattttcacatcccacccgcatccctcccattcatcccaa |
5459823 |
T |
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| Q |
224 |
t |
224 |
Q |
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| T |
5459824 |
t |
5459824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 45660986 - 45661043
Alignment:
| Q |
98 |
gcacaatcataatgactctttgcttagcacagcttcaaaccttctcagtccagcaagg |
155 |
Q |
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| T |
45660986 |
gcacaatcataatgaacacttgtttagcacagcttcaaacattctcagtacagcaagg |
45661043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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