View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18580_high_8 (Length: 489)
Name: NF18580_high_8
Description: NF18580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18580_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 199 - 410
Target Start/End: Original strand, 1158162 - 1158377
Alignment:
| Q |
199 |
tgatgcctccaataaataataataatgtttctaaatttggttttatcatactaggaaatgttaatctctagttaagtttagttgtaacaactctcatgtt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1158162 |
tgatgcctccaataaataataataatgtttctgaatttggttttatcat--taggaaatgtcaatctctagttaagtttagttgtaacaactctcatgtt |
1158259 |
T |
|
| Q |
299 |
gagtttttcaagagagaaactaatgtggttgctcacccatc------attgataaatgttgtttttggtaattaggttatagagaagaaaacaaatcatc |
392 |
Q |
| |
|
||||||| ||||||||| ||| | |||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1158260 |
gagttttcaaagagagaagttaacgaggttgctctttcatcattaatattaataaatgttgtttttggtaattaggttatagagaagaaaacaaatcatc |
1158359 |
T |
|
| Q |
393 |
taggtagtattaaccttc |
410 |
Q |
| |
|
||||| | ||||||||| |
|
|
| T |
1158360 |
taggtgggcttaaccttc |
1158377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 35425406 - 35425453
Alignment:
| Q |
277 |
tagttgtaacaactctcatgttgagtttttcaagagagaaactaatgt |
324 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
35425406 |
tagttgtaaaaactctcatgttgaatttttcaagagagaagctaatgt |
35425453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 6955137 - 6955084
Alignment:
| Q |
280 |
ttgtaacaactctcatgttgagtttttcaagagagaaactaatgtggttgctca |
333 |
Q |
| |
|
||||||||||||| |||| ||||||| |||||||| |||||| |||||||||| |
|
|
| T |
6955137 |
ttgtaacaactcttatgtcgagttttctaagagagagactaatatggttgctca |
6955084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 305
Target Start/End: Complemental strand, 51153783 - 51153739
Alignment:
| Q |
262 |
atctctagtta-agtttagttgtaacaactctcatgttgagtttt |
305 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| |||||||||||| |
|
|
| T |
51153783 |
atctctagttagagtttagttgtaagaactctaatgttgagtttt |
51153739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University